Dear Graham,

Thanks for the info.  However, my problem is that the "Tool Version" field
is completely empty in my history items (eg. Tophat2, Cuffdiff).  I suppose
I can check the dependancies list you described, but it would be important
to know precisely which version was run on any given query.

Best regards,

Message: 3
> Date: Tue, 5 Nov 2013 09:45:19 +0000
> From: "graham etherington (TSL)"
>         <>
> To: Cory Dunn <>, ""
>         <>
> Subject: Re: [galaxy-user] Cuffdiff version not apparent
> Message-ID:
>         <>
> Content-Type: text/plain; charset="Windows-1252"
> Hi Cory,
> A list of Galaxy dependancies can be found on the wiki at:
> ...although many tools allow a range of tool versions.
> You can also identify the information about the specific tool versions by
> clicking on the View Details ?i? icon of a history item created by that
> tool and looking at the Tool Version field.
> If you?re using the Galaxy public server ( then
> clicking on the ?i? icon of a cuffdiff output file will show:
> Tool Version:cuffdiff v2.1.1 (4046M)
> Hope this helps.
> Cheers,
> Graham
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