I am using Mpileup from the Main Server (current version 0.0.1).
In theory, this tool can generate two formats of output files: either a
.bcf or a pileup.
However, I couldn't find the option to select a .bcf file, even when I
click on "Set advanced options". When run, the program gives a pileup
output format.

Would you have any advice to select the output format, or alternatively,
a tool in Galaxy that can convert pileup into .vcf?

Many thanks for help,
Fabrice Besnard
Institute of Biology of the Ecole Normale Supérieure (IBENS)
46 rue d'Ulm, 75230 Paris cedex 05, France
8th floor. Office: Room 802. Lab: Room 817.
mail: fbesn...@biologie.ens.fr
Tel: +33-1-44-32-39-31
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