On Wed, Nov 6, 2013 at 12:08 PM, Fabrice Besnard
<fbesn...@biologie.ens.fr> wrote:

> Would you have any advice to select the output format, or alternatively,
> a tool in Galaxy that can convert pileup into .vcf?

Hi Fabrice,

I believe you only get the BCF output when "Genotype Likelihood
Computation" is set to "Perform genotype likelihood computation".

Hope it helps,
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