Hello Jorge,
This is on a local install of Galaxy? The problem with the tool install
sounds to be similar to the one you are having with trinity. The core
issue could be that the binary has not been installed. But first, you
set up the installation as a production server? And again, just to make
sure, you are running the most current distribution?
Distribution news:
https://wiki.galaxyproject.org/DevNewsBriefs
Initial set up:
http:/getgalaxy.org
Then to set up as a "production server" (meaning, customize):
https://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer
Some tool wrappers come with the Galaxy distribution, others you obtain
from the Tool Shed. Of these, some tools (including many from a Tool
Shed repository) will manage the installation of dependencies like
binaries, but others require that you download and install the
underlying binary yourself (true for any in the distribution and some in
the Tool Shed).
This is what the dependencies are and where to find them (when a tool is
in the distribution, or was, check the Tool Shed repository if that is
where the tool is sourced from):
https://wiki.galaxyproject.org/Admin/Tools/Tool%20Dependencies
And this is how to incorporate it into your instance:
https://wiki.galaxyproject.org/Admin/Config/Tool%20Dependencies
How to install tools from the Tool Shed:
https://wiki.galaxyproject.org/Tool%20Shed#Installing.2C_maintaining_and_uninstalling_tool_shed_repositories_within_a_Galaxy_instance
This was a question that is a good fit for the [email protected]
mailing list as well, so if you need help with installation, please post
a new question there. The more specific you are about what the problem
is, the easier it is for others to offer help (where in the installation
process you are having issues, etc.). Both velvet and trinity can be
resource intensive, so if you have trouble with them on a local install
(run, but not enough resource - compute or memory), then moving to a
cloud may be a solution.
http://usegalaxy.org/cloud
All Admin wiki docs are here:
https://wiki.galaxyproject.org/Admin
And prior Q&A plus admin docs can be searched here:
http://galaxyproject.org/search/getgalaxy
(Both are linked from the wiki side bar under "Deploy Galaxy")
Hope this helps!
Jen
Galaxy team
On 12/15/13 10:57 PM, Jorge Braun wrote:
Hello mates,
I'm new working with velvet and these days have several questions, if
anyone knows solution ... It is a great help!
Try using the galaxy velvet web platform but there are problems:
a) Velveth Velveth and functional? Because galaxy appears when running
in error:
Unable to run Velveth: No file exists
b) there worflow to install velvet in galaxy?
thank you very much
___________________________________________________________
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--
Jennifer Hillman-Jackson
http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
