I have a VCF file and I want to filter it for nonsynonymous/ deletion/
insertion  seq variations. Once I filter this file and compare between
tumor vs normal samples and then annotate such variations.  I believe I can
filter this file using SnpSift and then can annotate with SnpEff, When I
try to use Snsift filter it just says arbitrary expression. Are there rules
how to use expression for a particular filter with in galaxy. If  any one
has used SnpSift in galaxy may share their expertise.

The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:


To manage your subscriptions to this and other Galaxy lists,
please use the interface at:


To search Galaxy mailing lists use the unified search at:


Reply via email to