Hello,
You have probably seen the Tool Shed documentation, but if not, this is
the hub:
https://wiki.galaxyproject.org/Tool%20Shed
These are the topics about configuration:
https://wiki.galaxyproject.org/Tool%20Shed#The_contents_of_your_tool_shed_repository
And this sub-section of the above covers how to define/configure
dependencies so that they are part of the repository when others install it:
https://wiki.galaxyproject.org/DefiningRepositoryDependencies
This is a great addition, thanks for the contribution! If you run into
any trouble, send the details of where you are having problems to the
[email protected] mailing list, to better reach the development
community for troubleshooting.
You can also search prior dev Q/A here:
http://galaxyproject.org/search/getgalaxy/
On 1/6/14 7:23 AM, Sébastien Vigneau wrote:
Hi,
I have written a simple xml wrapper to run the UCSC *bigWigToBedGraph*
tool on a custom Galaxy install on Amazon cloud. The tool works as
expected in this install. The xml file itself is in
/mnt/galaxy/galaxy-app/tools/myTools, but I added the bigWigToBedGraph
binary to the /mnt/galaxy/tools/bin/ directory, which is by default in
the PATH. Alternatively, I guess I could have modified the PATH so
that it includes the myTools directory.
Since I would like to contribute the tool (my contribution being the
wrapper) to *Galaxy Tool Shed*, I am wondering*what is the best way to
include it so that it is found in the PATH* whenever the tool is
installed from the Tool Shed.
Thanks for your help!
Sébastien
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Jennifer Hillman-Jackson
http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
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