Hello Jen,

The Trypanosomas are sequenced by Sanger.  The sequences are available at 
GeneDB.

http://www.genedb.org/Homepage/Tbruceibrucei927

ftp://ftp.sanger.ac.uk/pub/pathogens/Trypanosoma/brucei/Latest_Whole_Genome_Sequence/Tb927_v5.2_20131108/fasta/
I work with EuPathDB (http://eupathdb.org) and some of our users are having 
trouble uploading larger BAM files onto our GBrowse instance. I thought it 
would be good to help our users convert their data into smaller file formats 
using Galaxy. I'm such a novice with that sort of thing, it's been good to have 
your help.

Susanne

Susanne Warrenfeltz, PhD
EuPathDB Outreach

http://eupathdb.org
Follow us on twitter: http://twitter.com/eupathdb
FaceBook:  https://www.facebook.com/pages/EuPathDB/133123003429972



From: Jennifer Jackson [mailto:j...@bx.psu.edu]
Sent: Monday, January 13, 2014 5:36 PM
To: Susanne Warrenfeltz; 'galaxy-user@lists.bx.psu.edu'
Subject: Re: [galaxy-user] add T. brucei 927 genome to Galaxy main?

Hi Susanne,

I wasn't able to locate this exact assembly at NCBI - is it there? Is there a 
known reason why it isn't? We have a general guideline to include genomes that 
are published there, although there is some leeway for open source, finished 
(or at least not early stage draft) genomes from other sources. I'll need to 
review (credits, usage, status, etc.).

Please have a look and write back with more details of what you know about this 
one (can be direct to me), so I don't miss anything.

Thanks!

Jen
Galaxy team


On 1/13/14 9:23 AM, Susanne Warrenfeltz wrote:
It would be very nice to see the Trypanosoma brucei TREU927 genome added to 
Galaxy:

http://tritrypdb.org/common/downloads/Current_Release/TbruceiTREU927/fasta/data/TriTrypDB-6.0_TbruceiTREU927_Genome.fasta


Thanks
Susanne






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