Hi all, over the last month we developed a new version of GATK2 wrappers and are now seeking for testers, users and overall feedback. We are currently targeting GATK 2.8. One of the big issues with GATK2 is the new licence. Because of that we can't install GATK2 with the wrappers, but we hope we have done it as easy as possible to plugin your local installed version. Furthermore, we made it easy to disable the 'call home feature' of GATK2 (if you have a GATK keyfile). Read more about it:
https://github.com/bgruening/galaxytools/blob/master/gatk2/readme.rst The code is stored here: https://github.com/bgruening/galaxytools/tree/master/gatk2 The ToolShed wrappers can be found here: http://toolshed.g2.bx.psu.edu/view/iuc/gatk2 I would like to thank Jim Johnson, Nicola Soranzo, Dan Blankenberg and the Galaxy Team. If you like the wrappers you know what to do during the next GCC! If you have feedback or patches please let us know. Thanks, Bjoern ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
