I am working on the project to predict SNP from NGS data. I have found SNP using SAM tools and GATK (used reference hg19). I would like to know effect of SNP using SNPeff in GALAXY. I have given SNP in vcf format. I could not change the genome option as human, it is set is C.elegans by default Please help me to solve this
On Tue, Mar 11, 2014 at 11:27 PM, Jennifer Jackson <j...@bx.psu.edu> wrote: > Hi Sathya, > > The public Main Galaxy instance is down right now due to server issues. We > anticipate this to be resolved by end of today. > > Please watch the messages at http://usegalaxy.org for updates. > > You can also follow Twitter at @galaxyproject, also posted on our wiki: > https://wiki.galaxyproject.org/Galaxy%20on%20Twitter > > Thanks, > > Jen > Galaxy team > > > On 3/11/14 2:45 AM, Sathya wrote: > > Now the galaxy main server is not working. I would like to know how long > it will take for galaxy to work again. > -- > With regards, > Sathya.B > > > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ > > > -- > Jennifer Hillman-Jacksonhttp://galaxyproject.org > > -- With regards, Sathya.B
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
