Hi Uma,

If you look under 'NGS Mapping' there is 'Map with Bowtie for SOLiD' and 'Map 
with BWA for SOLiD'
They take fastq, but you can use 'NGS: QC and manipulation' > 'Convert' to 
generate a fastq file from fastqc and qual files.  Or at least you could for 
SOLiD4 files.


From: galaxy-user-boun...@lists.bx.psu.edu 
[galaxy-user-boun...@lists.bx.psu.edu] on behalf of Chandran, Uma 
Sent: 11 March 2014 13:14
To: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except 
csfasta/qual data?

Are there mappers for SoLiD 5500 on Galaxy? If so, do they take csfasta files 
as input?

Uma Chandran
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