I am trying to add a new tool in Galaxy and I have the following problem.
Let me explain a simplified example. Let's imagine that my script works
from CLI as follows:
python script.py --input "input-file" --pattern "output-pattern"
After processing "input-file", the script writes several output files and
their name is given according to "output-pattern".
The number of output files depends on the content of "input-file". The
output files are written to the current working directory where script.py
In the simplest scenario, I get only one output file in the working
My problem is that I would like to see the output files in Galaxy's history
without modifying the CLI interface.
To solve this problem, I have looked at the wiki page:
and the email here:
However, I think that mine is a different scenario. I do not want to add
new output parameters in the CLI. I would like Galaxy to bring these output
files to my history without modifying the CLI options, is that possible?
Many thanks in advance for your help!
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