yes, you can link files to a Galaxy Library without copying - please see
last part 'Upload files from filesystem paths').
And there is an API for libraries (although it is under construction). The
flow of controllers for upload is api/library_contents >
On Tue, Mar 25, 2014 at 7:47 AM, do kadya <doka...@gmail.com> wrote:
> Can I upload data (mostly link the data) using terminal ?
> MuSiC 2 tool integration is not available in their website nor in tool
> MuSiC 2 creates folder and files by itself, which is hard to track by
> So is there any way to link files to galaxy current work space so that I
> can link those distracted files which are created by MuSiC 2.
> ex: if you run
> music2 bmr calc-bmr file_of_input
> output is 3 files,
> we can not mention that we need this output filename or save file at
> specific location, we can not give this option.
> Galaxy will not able to track this output, hence i have to do it manually.
> So is it possible to upload this files manually by terminal ?
> Waiting for positive reply.
> Thank You
> - Chetan
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org. Please keep all replies on the list by
> using "reply all" in your mail client. For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
> To search Galaxy mailing lists use the unified search at:
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
To search Galaxy mailing lists use the unified search at: