Dear All

when I run Cuffmerge using the latest GenCode v19 GTF as a reference 
genome….this fails to run…tried this using multiple approaches and datasets.

Of note…...Cuffmerge works fine when the Gencode GTF is omitted as a reference 
genome. CuffCompare also works fine when the same Gencode GTF is used as a 
reference genome.

Presumably there is something wrong with the Cuffmerge set-up relating to the 
reference genome? Or am I doing something wrong.

Best wishes


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