You can upload the required genome into your history and then from the "Use a built in reference genome or own from your history:" dropdown choose "use a genome from history" option of the Tophat tool. Tophat will then run using the desired reference genome.
BTW, these types of questions are best asked on the Biostar Q&A site for Galaxy (https://biostar.usegalaxy.org/) or the user mailing list (CC'd). That will give you better exposure to the community and hence a better chance for an answer. Hope this help, Enis On Sat, May 24, 2014 at 9:43 AM, shiny <shishish...@foxmail.com> wrote: > Hello,Enis Afgan. > I wonna run TOPHAT through the Galaxy project.Well, I can't find the > reference genome of *Carica papaya.*So should I ask for help as it shows > on the website,or it is easier should I turn to use Linux shell for me? > Shiny >
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