Revision: 19658
http://sourceforge.net/p/gate/code/19658
Author: markagreenwood
Date: 2016-10-10 06:46:13 +0000 (Mon, 10 Oct 2016)
Log Message:
-----------
a bunch more bu/performance fixes including some copied over from trunk
Modified Paths:
--------------
gate/branches/sawdust2/gate-core/findbugs-excluded.xml
gate/branches/sawdust2/gate-core/src/main/java/gate/annotation/AnnotationSetImpl.java
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/ConllDocumentFormat.java
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/DocumentImpl.java
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/DocumentStaxUtils.java
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/MimeType.java
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/ObjectWrapper.java
Removed Paths:
-------------
gate/branches/sawdust2/gate-core/src/main/java/gate/util/ant/SyncEclipse.java
Modified: gate/branches/sawdust2/gate-core/findbugs-excluded.xml
===================================================================
--- gate/branches/sawdust2/gate-core/findbugs-excluded.xml 2016-10-10
01:22:45 UTC (rev 19657)
+++ gate/branches/sawdust2/gate-core/findbugs-excluded.xml 2016-10-10
06:46:13 UTC (rev 19658)
@@ -6,6 +6,7 @@
ignore these. We'll revist this issue at some future point.
-->
<Bug pattern="DM_DEFAULT_ENCODING" />
+ <Bug pattern="DM_CONVERT_CASE" />
</Or>
</Match>
Modified:
gate/branches/sawdust2/gate-core/src/main/java/gate/annotation/AnnotationSetImpl.java
===================================================================
---
gate/branches/sawdust2/gate-core/src/main/java/gate/annotation/AnnotationSetImpl.java
2016-10-10 01:22:45 UTC (rev 19657)
+++
gate/branches/sawdust2/gate-core/src/main/java/gate/annotation/AnnotationSetImpl.java
2016-10-10 06:46:13 UTC (rev 19658)
@@ -278,12 +278,12 @@
/** Remove from the offset indices. */
protected void removeFromOffsetIndex(Annotation a) {
- if(nodesByOffset != null) {
+ /*if(nodesByOffset != null) {
// knowing when a node is no longer needed would require keeping a
// reference
// count on annotations, or using a weak reference to the nodes in
// nodesByOffset
- }
+ }*/
if(annotsByStartNode != null) {
Integer id = a.getStartNode().getId();
// might be an annotation or an annotationset
@@ -686,7 +686,7 @@
public AnnotationSet get(String type, FeatureMap constraints, Long offset) {
// select by offset
AnnotationSet nextAnnots = get(offset);
- if(nextAnnots == null) return emptyAS();
+
// select by type and constraints from the next annots
return nextAnnots.get(type, constraints);
} // get(type, constraints, offset)
Modified:
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/ConllDocumentFormat.java
===================================================================
---
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/ConllDocumentFormat.java
2016-10-10 01:22:45 UTC (rev 19657)
+++
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/ConllDocumentFormat.java
2016-10-10 06:46:13 UTC (rev 19658)
@@ -203,8 +203,7 @@
* end offset on an annotation that has one, but chop it off if it's still
unspecified.
*/
private void finishAllTags(Map<String, Annotandum> annsUnderway,
List<Annotandum> annsFinished, long cutoff) {
- for (String key : annsUnderway.keySet()) {
- Annotandum ann = annsUnderway.get(key);
+ for (Annotandum ann : annsUnderway.values()) {
if (ann.endOffset == null) {
ann.endOffset = cutoff;
}
Modified:
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/DocumentImpl.java
===================================================================
---
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/DocumentImpl.java
2016-10-10 01:22:45 UTC (rev 19657)
+++
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/DocumentImpl.java
2016-10-10 06:46:13 UTC (rev 19658)
@@ -2243,37 +2243,33 @@
* Constant used in the inner class AnnotationComparator to order annotations
* on their start offset
*/
- private final int ORDER_ON_START_OFFSET = 0;
+ private static final int ORDER_ON_START_OFFSET = 0;
/**
* Constant used in the inner class AnnotationComparator to order annotations
* on their end offset
*/
- private final int ORDER_ON_END_OFFSET = 1;
+ private static final int ORDER_ON_END_OFFSET = 1;
/**
* Constant used in the inner class AnnotationComparator to order annotations
* on their ID
*/
- private final int ORDER_ON_ANNOT_ID = 2;
+ private static final int ORDER_ON_ANNOT_ID = 2;
/**
* Constant used in the inner class AnnotationComparator to order annotations
* ascending
*/
- private final int ASC = 3;
+ private static final int ASC = 3;
/**
* Constant used in the inner class AnnotationComparator to order annotations
* descending
*/
- private final int DESC = -3;
+ private static final int DESC = -3;
/**
- * The range that the content comes from at the source URL (or null if none).
- */
- // protected Long[] sourceUrlOffsets;
- /**
* The start of the range that the content comes from at the source URL (or
* null if none).
*/
@@ -2320,7 +2316,7 @@
} // set StringContent
/** Is the document markup-aware? */
- protected Boolean markupAware = new Boolean(false);
+ protected Boolean markupAware = Boolean.FALSE;
// /** Hash code */
// public int hashCode() {
@@ -2370,7 +2366,7 @@
static final long serialVersionUID = -8456893608311510260L;
/** Inner class needed to compare annotations */
- class AnnotationComparator implements Comparator<Annotation> {
+ static class AnnotationComparator implements Comparator<Annotation> {
int orderOn = -1;
int orderType = ASC;
Modified:
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/DocumentStaxUtils.java
===================================================================
---
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/DocumentStaxUtils.java
2016-10-10 01:22:45 UTC (rev 19657)
+++
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/DocumentStaxUtils.java
2016-10-10 06:46:13 UTC (rev 19658)
@@ -287,7 +287,7 @@
int startNodeId = Integer.parseInt(xsr.getAttributeValue(null,
"StartNode"));
if(nodeIdToOffsetMap != null) {
- Long startOffset = nodeIdToOffsetMap.get(new Integer(startNodeId));
+ Long startOffset = nodeIdToOffsetMap.get(startNodeId);
if(startOffset != null) {
annObj.setStart(startOffset);
}
@@ -298,7 +298,7 @@
}
else {
// no offset map, so just use the ID as an offset
- annObj.setStart(new Long(startNodeId));
+ annObj.setStart(Long.valueOf(startNodeId));
}
}
catch(NumberFormatException nfe) {
@@ -310,7 +310,7 @@
int endNodeId = Integer
.parseInt(xsr.getAttributeValue(null, "EndNode"));
if(nodeIdToOffsetMap != null) {
- Long endOffset = nodeIdToOffsetMap.get(new Integer(endNodeId));
+ Long endOffset = nodeIdToOffsetMap.get(endNodeId);
if(endOffset != null) {
annObj.setEnd(endOffset);
}
@@ -321,7 +321,7 @@
}
else {
// no offset map, so just use the ID as an offset
- annObj.setEnd(new Long(endNodeId));
+ annObj.setEnd(Long.valueOf(endNodeId));
}
}
catch(NumberFormatException nfe) {
@@ -437,10 +437,6 @@
while((eventType = xsr.next()) != XMLStreamConstants.END_ELEMENT) {
switch(eventType) {
case XMLStreamConstants.CHARACTERS:
- stringRep.append(xsr.getTextCharacters(), xsr.getTextStart(),
- xsr.getTextLength());
- break;
-
case XMLStreamConstants.CDATA:
stringRep.append(xsr.getTextCharacters(), xsr.getTextStart(),
xsr.getTextLength());
@@ -503,7 +499,7 @@
}
try {
Integer id = Integer.valueOf(idString);
- Long offset = new Long(textBuf.length());
+ Long offset = Long.valueOf(textBuf.length());
nodeIdToOffsetMap.put(id, offset);
}
catch(NumberFormatException nfe) {
@@ -584,15 +580,11 @@
while((eventType = xsr.next()) != XMLStreamConstants.END_ELEMENT) {
switch(eventType) {
case XMLStreamConstants.CHARACTERS:
+ case XMLStreamConstants.CDATA:
stringRep.append(xsr.getTextCharacters(), xsr.getTextStart(), xsr
.getTextLength());
break;
- case XMLStreamConstants.CDATA:
- stringRep.append(xsr.getTextCharacters(), xsr.getTextStart(), xsr
- .getTextLength());
- break;
-
case XMLStreamConstants.START_ELEMENT:
throw new XMLStreamException("Elements not allowed within "
+ "feature name or value element.", xsr.getLocation());
@@ -809,17 +801,15 @@
AnnotationObject annObj = new AnnotationObject();
annObj.setElemName(xsr.getAttributeValue(null, "type"));
try {
- int from = Integer.parseInt(xsr.getAttributeValue(null, "from"));
- annObj.setStart(new Long(from));
+ annObj.setStart(Long.valueOf(xsr.getAttributeValue(null, "from")));
}
catch(NumberFormatException nfe) {
throw new XMLStreamException(
"Non-integer value found for struct/@from", xsr.getLocation());
}
- try {
- int to = Integer.parseInt(xsr.getAttributeValue(null, "to"));
- annObj.setEnd(new Long(to));
+ try{
+ annObj.setEnd(Long.valueOf(xsr.getAttributeValue(null, "to")));
}
catch(NumberFormatException nfe) {
throw new XMLStreamException("Non-integer value found for struct/@to",
@@ -1057,13 +1047,14 @@
// Serialize all others AnnotationSets
// namedAnnotSets is a Map containing all other named Annotation
// Sets.
- Iterator<String> iter = annotationSets.keySet().iterator();
- while(iter.hasNext()) {
- String annotationSetName = iter.next();
+ //Iterator<String> iter = annotationSets.keySet().iterator();
+ //while(iter.hasNext()) {
+ for (Map.Entry<String,Collection<Annotation>> entry :
annotationSets.entrySet()) {
+ String annotationSetName = entry.getKey();//iter.next();
// ignore the null entry, if present - we've already handled that
// above
if(annotationSetName != null) {
- Collection<Annotation> annots = annotationSets.get(annotationSetName);
+ Collection<Annotation> annots =
entry.getValue();//annotationSets.get(annotationSetName);
xsw.writeComment(" Named annotation set ");
newLine(xsw);
newLine(xsw);
@@ -1076,7 +1067,7 @@
}// End if
}// End while
- iter = annotationSets.keySet().iterator();
+ Iterator<String> iter = annotationSets.keySet().iterator();
while(iter.hasNext()) {
writeRelationSet(doc.getAnnotations(iter.next()).getRelations(), xsw,
@@ -1477,32 +1468,31 @@
Set<Object> keySet = features.keySet();
Iterator<Object> keySetIterator = keySet.iterator();
- FEATURES:while(keySetIterator.hasNext()) {
+ //FEATURES:
+ while(keySetIterator.hasNext()) {
Object key = keySetIterator.next();
Object value = features.get(key);
if(key != null && value != null) {
String keyClassName = null;
- String keyItemClassName = null;
+ //String keyItemClassName = null;
String valueClassName = null;
- String valueItemClassName = null;
+ //String valueItemClassName = null;
String key2String = key.toString();
String value2String = value.toString();
- Object item = null;
- // Test key if it is String, Number or Collection
+ //Object item = null;
+ // Test key if it is String, Number
if(key instanceof java.lang.String ||
- key instanceof java.lang.Number ||
- key instanceof java.util.Collection) {
+ key instanceof java.lang.Number) {
keyClassName = key.getClass().getName();
} else {
keyClassName = ObjectWrapper.class.getName();
key2String = new ObjectWrapper(key).toString();
}
- // Test value if it is String, Number or Collection
+ // Test value if it is String, Number
if(value instanceof java.lang.String
|| value instanceof java.lang.Number
- || value instanceof java.lang.Boolean
- || value instanceof java.util.Collection){
+ || value instanceof java.lang.Boolean){
valueClassName = value.getClass().getName();
} else {
valueClassName = ObjectWrapper.class.getName();
@@ -1512,51 +1502,8 @@
// Features and values that are not Strings, Numbers, Booleans or
// collections
// will be discarded.
- if(keyClassName == null || valueClassName == null) continue;
+ //if(keyClassName == null || valueClassName == null) continue;
- // If key is collection serialize the collection in a specific
- // format
- if(key instanceof java.util.Collection) {
- StringBuffer keyStrBuff = new StringBuffer();
- Iterator<?> iter = ((Collection<?>)key).iterator();
- if(iter.hasNext()) {
- item = iter.next();
- if(item == null) continue FEATURES;
- if(item instanceof java.lang.Number)
- keyItemClassName = item.getClass().getName();
- else keyItemClassName = String.class.getName();
- keyStrBuff.append(item.toString());
- }// End if
- while(iter.hasNext()) {
- item = iter.next();
- if(item == null) continue FEATURES;
- keyStrBuff.append(";").append(item.toString());
- }// End while
- key2String = keyStrBuff.toString();
- }// End if
-
- // If key is collection serialize the colection in a specific
- // format
- if(value instanceof java.util.Collection) {
- StringBuffer valueStrBuff = new StringBuffer();
- Iterator<?> iter = ((Collection<?>)value).iterator();
- if(iter.hasNext()) {
- item = iter.next();
- if(item == null) continue FEATURES;
- if(item instanceof java.lang.Number
- || item instanceof java.lang.Boolean)
- valueItemClassName = item.getClass().getName();
- else valueItemClassName = String.class.getName();
- valueStrBuff.append(item.toString());
- }// End if
- while(iter.hasNext()) {
- item = iter.next();
- if(item == null) continue FEATURES;
- valueStrBuff.append(";").append(item.toString());
- }// End while
- value2String = valueStrBuff.toString();
- }// End if
-
xsw.writeStartElement(namespaceURI, "Feature");
xsw.writeCharacters("\n ");
@@ -1565,9 +1512,9 @@
if(keyClassName != null) {
xsw.writeAttribute("className", keyClassName);
}
- if(keyItemClassName != null) {
- xsw.writeAttribute("itemClassName", keyItemClassName);
- }
+ //if(keyItemClassName != null) {
+ // xsw.writeAttribute("itemClassName", keyItemClassName);
+ //}
xsw.writeCharacters(key2String);
xsw.writeEndElement();
xsw.writeCharacters("\n ");
@@ -1577,9 +1524,9 @@
if(valueClassName != null) {
xsw.writeAttribute("className", valueClassName);
}
- if(valueItemClassName != null) {
- xsw.writeAttribute("itemClassName", valueItemClassName);
- }
+ //if(valueItemClassName != null) {
+ // xsw.writeAttribute("itemClassName", valueItemClassName);
+ //}
writeCharactersOrCDATA(xsw,
replaceXMLIllegalCharactersInString(value2String));
xsw.writeEndElement();
Modified:
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/MimeType.java
===================================================================
--- gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/MimeType.java
2016-10-10 01:22:45 UTC (rev 19657)
+++ gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/MimeType.java
2016-10-10 06:46:13 UTC (rev 19658)
@@ -1,5 +1,5 @@
/*
- * TextualDocumentFormat.java
+ * MimeType.java
*
* Copyright (c) 1995-2012, The University of Sheffield. See the file
* COPYRIGHT.txt in the software or at http://gate.ac.uk/gate/COPYRIGHT.txt
@@ -40,20 +40,32 @@
* @return true if the two MIME Types are the same.
*/
@Override
- public boolean equals(Object other){
- return other != null && type.equals(((MimeType)other).getType()) &&
- subtype.equals(((MimeType)other).getSubtype());
+ public boolean equals(Object obj) {
+ if(this == obj) return true;
+ if(obj == null) return false;
+ if(getClass() != obj.getClass()) return false;
+ MimeType other = (MimeType)obj;
+ if(subtype == null) {
+ if(other.subtype != null) return false;
+ } else if(!subtype.equals(other.subtype)) return false;
+ if(type == null) {
+ if(other.type != null) return false;
+ } else if(!type.equals(other.type)) return false;
+ return true;
}
-
+
/**
* The hashcode is composed (by addition) from the hashcodes for the type and
* subtype.
* @return and integer.
*/
@Override
- public int hashCode(){
- return (type == null ? 0 : type.hashCode()) +
- (subtype == null ? 0 : subtype.hashCode());
+ public int hashCode() {
+ final int prime = 31;
+ int result = 1;
+ result = prime * result + ((subtype == null) ? 0 : subtype.hashCode());
+ result = prime * result + ((type == null) ? 0 : type.hashCode());
+ return result;
}
/**
Modified:
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/ObjectWrapper.java
===================================================================
---
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/ObjectWrapper.java
2016-10-10 01:22:45 UTC (rev 19657)
+++
gate/branches/sawdust2/gate-core/src/main/java/gate/corpora/ObjectWrapper.java
2016-10-10 06:46:13 UTC (rev 19658)
@@ -59,7 +59,6 @@
Object other = xstream.fromXML(xmlSerialisation);
if(other instanceof ObjectWrapper) {
this.value = ((ObjectWrapper)other).value;
- other = null;
} else {
log.error("Value de-serialised from XML is of type \"" +
other.getClass().getName() + "\", instead of expected \"" +
Deleted:
gate/branches/sawdust2/gate-core/src/main/java/gate/util/ant/SyncEclipse.java
===================================================================
---
gate/branches/sawdust2/gate-core/src/main/java/gate/util/ant/SyncEclipse.java
2016-10-10 01:22:45 UTC (rev 19657)
+++
gate/branches/sawdust2/gate-core/src/main/java/gate/util/ant/SyncEclipse.java
2016-10-10 06:46:13 UTC (rev 19658)
@@ -1,164 +0,0 @@
-/*
- * Copyright (c) 1995-2012, The University of Sheffield. See the file
- * COPYRIGHT.txt in the software or at http://gate.ac.uk/gate/COPYRIGHT.txt
- *
- * This file is part of GATE (see http://gate.ac.uk/), and is free software,
- * licenced under the GNU Library General Public License, Version 2, June 1991
- * (in the distribution as file licence.html, and also available at
- * http://gate.ac.uk/gate/licence.html).
- *
- * Mark A. Greenwood, 21/01/2012
- *
- * $Id$
- */
-
-package gate.util.ant;
-
-import gate.util.ExtensionFileFilter;
-import gate.util.Files;
-import gate.util.persistence.PersistenceManager;
-
-import java.io.File;
-import java.io.FileFilter;
-import java.io.FileWriter;
-import java.util.Arrays;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Set;
-
-import org.apache.tools.ant.BuildException;
-import org.apache.tools.ant.Task;
-import org.jdom.Document;
-import org.jdom.Element;
-import org.jdom.input.SAXBuilder;
-import org.jdom.output.Format;
-import org.jdom.output.XMLOutputter;
-import org.jdom.xpath.XPath;
-
-/**
- * An ANT task that syncs an Eclipse classpath file against a folder of jar
- * files. Once the task has completed all jar files in the specified folder
will
- * be mentioned within the Eclipse classpath file and any jars that were
- * mentioned in the classpath file as being with the specified folder and which
- * no longer exist will have been removed.
- */
-public class SyncEclipse extends Task {
-
- private XMLOutputter outputter = new XMLOutputter(Format.getPrettyFormat()
- .setIndent("\t"));
-
- private File dir, classpath;
-
- private boolean recursive = true;
-
- private boolean verbose = false;
-
- public boolean isRecursive() {
- return recursive;
- }
-
- public void setRecursive(boolean recursive) {
- this.recursive = recursive;
- }
-
- public boolean isVerbose() {
- return verbose;
- }
-
- public void setVerbose(boolean verbose) {
- this.verbose = verbose;
- }
-
- public File getDir() {
- return dir;
- }
-
- public void setDir(File dir) {
- this.dir = dir;
- }
-
- public File getClasspathFile() {
- return classpath;
- }
-
- public void setClasspathFile(File classpath) {
- this.classpath = classpath;
- }
-
- @Override
- public void execute() throws BuildException {
- if(dir == null)
- throw new BuildException("Please specify a directory", getLocation());
-
- if(!dir.exists() || !dir.isDirectory())
- throw new BuildException("Specified directory doesn't exist",
- getLocation());
-
- FileFilter ff = new ExtensionFileFilter("JAR Files", "jar");
-
- if(classpath == null)
- classpath = new File(getProject().getBaseDir(), ".classpath");
-
- if(!classpath.exists() || !classpath.isFile())
- throw new BuildException("Eclipse classpath file can't be located",
- getLocation());
-
- Set<File> jars = new HashSet<File>();
- for(File f : Arrays.asList(recursive
- ? Files.listFilesRecursively(dir, ff)
- : dir.listFiles(ff))) {
- if(!f.isDirectory()) jars.add(f);
- }
-
- boolean dirty = false;
-
- try {
- SAXBuilder builder = new SAXBuilder();
- Document classpathDoc = builder.build(classpath);
-
- @SuppressWarnings("unchecked")
- List<Element> libEntries =
- XPath.newInstance("/classpath/classpathentry[@kind='lib']")
- .selectNodes(classpathDoc);
-
- String relative =
PersistenceManager.getRelativePath(classpath.toURI().toURL(),
dir.toURI().toURL());
-
- for(Element e : libEntries) {
- String path = e.getAttributeValue("path");
- if(path.startsWith(relative)) {
- File f = new File(classpath.getParentFile(), path);
- if(jars.contains(f)) {
- if (verbose) System.out.println("KEEPING: " + path);
- jars.remove(f);
- } else {
- dirty = true;
- if (verbose) System.out.println("REMOVED: " + path);
- Element parent = e.getParentElement();
- parent.removeContent(e);
- }
- }
- }
-
- if(!jars.isEmpty()) {
- dirty = true;
- for(File f : jars) {
- String path =
- PersistenceManager.getRelativePath(classpath.toURI().toURL(), f
- .toURI().toURL());
- if (verbose) System.out.println("ADDED: " + path);
- Element libElement =
- new Element("classpathentry").setAttribute("kind", "lib")
- .setAttribute("exported", "true").setAttribute("path", path);
- classpathDoc.getRootElement().addContent(libElement);
- }
- }
-
- if(dirty) {
- outputter.output(classpathDoc, new FileWriter(classpath));
- }
-
- } catch(Exception e) {
- throw new BuildException(e, getLocation());
- }
- }
-}
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