Branch: refs/heads/master
  Home:   https://github.com/uzh/gc3pie
  Commit: 26ed36b703be044837a8ef0618e4d8cbda483bde
      
https://github.com/uzh/gc3pie/commit/26ed36b703be044837a8ef0618e4d8cbda483bde
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-08 (Fri, 08 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/index.rst
    A docs/programmers/tutorials/workflows/Makefile
    A docs/programmers/tutorials/workflows/TEMPLATE.tex
    A docs/programmers/tutorials/workflows/beamerthemegc3.sty
    A docs/programmers/tutorials/workflows/gc3.sty
    A docs/programmers/tutorials/workflows/part00.pdf
    A docs/programmers/tutorials/workflows/part00.tex
    A docs/programmers/tutorials/workflows/uzh_logo_e_pos.pdf

  Log Message:
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  First draft slide deck for the July 2016 course.


  Commit: c5f1610bb5f1f5c3fe20da475296365e0c10b19c
      
https://github.com/uzh/gc3pie/commit/c5f1610bb5f1f5c3fe20da475296365e0c10b19c
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-08 (Fri, 08 Jul 2016)

  Changed paths:
    M gc3libs/cmdline.py

  Log Message:
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  Fix docstring of `SessionBasedScript.new_tasks()`


  Commit: 9d533d002a2c966132a175809ccfee35fc344a74
      
https://github.com/uzh/gc3pie/commit/9d533d002a2c966132a175809ccfee35fc344a74
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-09 (Sat, 09 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/bottom-up/gc3.sty
    M docs/programmers/tutorials/index.rst
    A docs/programmers/tutorials/workflows/day1.py
    A docs/programmers/tutorials/workflows/fig/states-NEW.pdf
    A docs/programmers/tutorials/workflows/fig/states-RUNNING.pdf
    A docs/programmers/tutorials/workflows/fig/states-STOPPED.pdf
    A docs/programmers/tutorials/workflows/fig/states-SUBMITTED.pdf
    A docs/programmers/tutorials/workflows/fig/states-TERMINATED.pdf
    A docs/programmers/tutorials/workflows/fig/states-TERMINATING.pdf
    A docs/programmers/tutorials/workflows/fig/states-UNKNOWN.pdf
    M docs/programmers/tutorials/workflows/gc3.sty
    A docs/programmers/tutorials/workflows/grayscale_app.py
    A docs/programmers/tutorials/workflows/lena.jpg
    A docs/programmers/tutorials/workflows/make_state_graph.py
    A docs/programmers/tutorials/workflows/part01.pdf
    A docs/programmers/tutorials/workflows/part01.tex
    A docs/programmers/tutorials/workflows/part02.pdf
    A docs/programmers/tutorials/workflows/part02.tex
    A docs/programmers/tutorials/workflows/solutions/ex2b.py

  Log Message:
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  Draft slide decks for parts 1 and 2.


  Commit: 589f3b8594253623367a103b0a1c61ada9d62526
      
https://github.com/uzh/gc3pie/commit/589f3b8594253623367a103b0a1c61ada9d62526
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-09 (Sat, 09 Jul 2016)

  Changed paths:
    R docs/programmers/tutorials/workflows/day1.py
    M docs/programmers/tutorials/workflows/part02.pdf
    M docs/programmers/tutorials/workflows/part02.tex
    A docs/programmers/tutorials/workflows/solutions/ex2a.py

  Log Message:
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  Rename `day1.py` to `ex2a.py`.

The convention for naming exercises can hold for
hands-on material as well.


  Commit: 659dfbf447b9458396c0d6f5a52602ca5f382aa0
      
https://github.com/uzh/gc3pie/commit/659dfbf447b9458396c0d6f5a52602ca5f382aa0
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-09 (Sat, 09 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part02.tex

  Log Message:
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  Make code in the "GrayscaleApp" consistent across slides.


  Commit: 2a39a72eff803209adb87847fbdd9dc385ca9d78
      
https://github.com/uzh/gc3pie/commit/2a39a72eff803209adb87847fbdd9dc385ca9d78
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-09 (Sat, 09 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part02.pdf
    M docs/programmers/tutorials/workflows/part02.tex
    A docs/programmers/tutorials/workflows/part03.pdf
    A docs/programmers/tutorials/workflows/part03.tex

  Log Message:
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  Split old part 2 into two separate slide decks.


  Commit: a6acf7e1f3ad339c23ad4ae38e04844d8bccb94d
      
https://github.com/uzh/gc3pie/commit/a6acf7e1f3ad339c23ad4ae38e04844d8bccb94d
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M gc3libs/utils.py
    M gc3utils/commands.py

  Log Message:
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  Sort `ginfo` output.


  Commit: 50b3f7bf336744eacd09f0a9711d4eb1e66ab9e7
      
https://github.com/uzh/gc3pie/commit/50b3f7bf336744eacd09f0a9711d4eb1e66ab9e7
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/solutions/ex2b.py

  Log Message:
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  solutions/ex2b.py: Correct script name for import.


  Commit: ee242d888d0df153c610d9517b174ed1669bc646
      
https://github.com/uzh/gc3pie/commit/ee242d888d0df153c610d9517b174ed1669bc646
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/bottom-up/gc3.sty
    M docs/programmers/tutorials/workflows/gc3.sty

  Log Message:
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  gc3.sty: Add new verbatim environment `stdout`.


  Commit: b5ea30ecb90c79f3c8066abac8eaca7870eb06e2
      
https://github.com/uzh/gc3pie/commit/b5ea30ecb90c79f3c8066abac8eaca7870eb06e2
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part02.pdf
    M docs/programmers/tutorials/workflows/part02.tex

  Log Message:
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  part02: Add section on resources.


  Commit: 815884f614e11bb0ff1cce3018e9dbc3395473b5
      
https://github.com/uzh/gc3pie/commit/815884f614e11bb0ff1cce3018e9dbc3395473b5
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/index.rst
    M docs/programmers/tutorials/workflows/part03.pdf
    M docs/programmers/tutorials/workflows/part03.tex
    A docs/programmers/tutorials/workflows/part04.pdf
    A docs/programmers/tutorials/workflows/part04.tex

  Log Message:
  -----------
  New part 3 covering useful debugging commands.


  Commit: 6ad4e17eb39dc5b40af70b1905763906d9c4a87a
      
https://github.com/uzh/gc3pie/commit/6ad4e17eb39dc5b40af70b1905763906d9c4a87a
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part02.pdf
    M docs/programmers/tutorials/workflows/part02.tex
    M docs/programmers/tutorials/workflows/solutions/ex2b.py
    A docs/programmers/tutorials/workflows/solutions/ex2c.py

  Log Message:
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  Add solution file for ex. 2.C


  Commit: 27df3151cc5794c9a7188dfa736e5f03d8b23825
      
https://github.com/uzh/gc3pie/commit/27df3151cc5794c9a7188dfa736e5f03d8b23825
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-11 (Mon, 11 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part00.pdf
    M docs/programmers/tutorials/workflows/part00.tex

  Log Message:
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  part00: update links with tinurl-ed ones


  Commit: 5443cf9bcb39de802c62bc082b71d44a5a4f8242
      
https://github.com/uzh/gc3pie/commit/5443cf9bcb39de802c62bc082b71d44a5a4f8242
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-11 (Mon, 11 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part01.pdf
    M docs/programmers/tutorials/workflows/part01.tex

  Log Message:
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  part01: Fix workflow image name


  Commit: c4231a9fd0d1bf9d594d6af071ed622b3ad8489a
      
https://github.com/uzh/gc3pie/commit/c4231a9fd0d1bf9d594d6af071ed622b3ad8489a
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-11 (Mon, 11 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part02.pdf
    M docs/programmers/tutorials/workflows/part02.tex

  Log Message:
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  part02: Fix download links


  Commit: cccbcf4dc781abb3397c986f9d67d8769b392499
      
https://github.com/uzh/gc3pie/commit/cccbcf4dc781abb3397c986f9d67d8769b392499
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-11 (Mon, 11 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/grayscale_app.py
    M docs/programmers/tutorials/workflows/solutions/ex2c.py

  Log Message:
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  Work around issue #559 in training material.


  Commit: 636a3ec3b1561f7acdd72cb5deff1daaaf172245
      
https://github.com/uzh/gc3pie/commit/636a3ec3b1561f7acdd72cb5deff1daaaf172245
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-11 (Mon, 11 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/solutions/ex2c.py

  Log Message:
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  ex2c: Use separate output directory per task.

Fixes issues with all tasks concurrently downloading output to "grayscale.d"


  Commit: d95cba9f811028f7cd35b45a1fd8621abf815121
      
https://github.com/uzh/gc3pie/commit/d95cba9f811028f7cd35b45a1fd8621abf815121
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-11 (Mon, 11 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part02.pdf
    M docs/programmers/tutorials/workflows/part02.tex

  Log Message:
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  part02: Use `$` prompt to mark *all* shell examples.


  Commit: 92fced30f69eb639dc424525cf2506ea6f6d4e43
      
https://github.com/uzh/gc3pie/commit/92fced30f69eb639dc424525cf2506ea6f6d4e43
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    A docs/programmers/tutorials/workflows/downloads/ra.m
    M docs/programmers/tutorials/workflows/part04.pdf
    M docs/programmers/tutorials/workflows/part04.tex

  Log Message:
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  Finalize part04


  Commit: bd24617a5d46dd0846a49a78c0f1ff79817b1478
      
https://github.com/uzh/gc3pie/commit/bd24617a5d46dd0846a49a78c0f1ff79817b1478
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    A docs/programmers/tutorials/workflows/downloads/grayscale_app.py
    R docs/programmers/tutorials/workflows/grayscale_app.py
    M docs/programmers/tutorials/workflows/part02.tex

  Log Message:
  -----------
  Collect all working examples etc. into `downloads/` directory.


  Commit: aa9a7bf905da012ad8638032c52ea91179b04a3a
      
https://github.com/uzh/gc3pie/commit/aa9a7bf905da012ad8638032c52ea91179b04a3a
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    A docs/programmers/tutorials/workflows/downloads/argp.py
    A 
docs/programmers/tutorials/workflows/downloads/topblast/176279.9.PATRIC.faa
    A 
docs/programmers/tutorials/workflows/downloads/topblast/176280.10.PATRIC.faa
    A 
docs/programmers/tutorials/workflows/downloads/topblast/359786.13.PATRIC.faa
    A 
docs/programmers/tutorials/workflows/downloads/topblast/359787.11.PATRIC.faa
    A docs/programmers/tutorials/workflows/part05.pdf
    A docs/programmers/tutorials/workflows/part05.tex

  Log Message:
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  Add part05 with support files.


  Commit: 2d32ddbf06e2d5a8d0a709f67f5a56305edfea78
      
https://github.com/uzh/gc3pie/commit/2d32ddbf06e2d5a8d0a709f67f5a56305edfea78
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part04.pdf
    M docs/programmers/tutorials/workflows/part04.tex
    M docs/programmers/tutorials/workflows/part05.pdf
    M docs/programmers/tutorials/workflows/part05.tex

  Log Message:
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  part04, part05: Fix typos and other cosmetic changes.


  Commit: 92a49c4b74bb0522ac4c092e4aeaa39c973ebe80
      
https://github.com/uzh/gc3pie/commit/92a49c4b74bb0522ac4c092e4aeaa39c973ebe80
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part04.pdf
    M docs/programmers/tutorials/workflows/part04.tex

  Log Message:
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  part04: Split exercise 4.B in two parts.


  Commit: e25e4687914c7f3822e7daf6aee130f3cad4ce36
      
https://github.com/uzh/gc3pie/commit/e25e4687914c7f3822e7daf6aee130f3cad4ce36
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part03.pdf
    M docs/programmers/tutorials/workflows/part03.tex

  Log Message:
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  part03: Add final slide on manual cleanup.


  Commit: f7e1448050813b1c626e210df43ac2aabbb5ceec
      
https://github.com/uzh/gc3pie/commit/f7e1448050813b1c626e210df43ac2aabbb5ceec
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part04.pdf
    M docs/programmers/tutorials/workflows/part04.tex
    M docs/programmers/tutorials/workflows/part05.pdf
    M docs/programmers/tutorials/workflows/part05.tex

  Log Message:
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  Swap parts 4 and 5


  Commit: 96c2f2db738ef3b3a3646a210ae7b6453803dff5
      
https://github.com/uzh/gc3pie/commit/96c2f2db738ef3b3a3646a210ae7b6453803dff5
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/index.rst

  Log Message:
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  Update documentation index with latest slides.


  Commit: 0c3e8f0444aa7fe1c73e112c54afd99fac747866
      
https://github.com/uzh/gc3pie/commit/0c3e8f0444aa7fe1c73e112c54afd99fac747866
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/solutions/ex2a.py
    M docs/programmers/tutorials/workflows/solutions/ex2b.py
    M docs/programmers/tutorials/workflows/solutions/ex2c.py
    A docs/programmers/tutorials/workflows/solutions/ex4a.py
    A docs/programmers/tutorials/workflows/solutions/ex4b.py

  Log Message:
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  Solutions of exercises through part 4.


  Commit: 316a0df098574dc65f707f20fa2152251128777e
      
https://github.com/uzh/gc3pie/commit/316a0df098574dc65f707f20fa2152251128777e
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    A docs/programmers/tutorials/workflows/downloads/topblast/README.rst

  Log Message:
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  Add README file to FAA downloads directory.


  Commit: 081a2f0376f6bd28e0ef36eab32d6208d219203d
      
https://github.com/uzh/gc3pie/commit/081a2f0376f6bd28e0ef36eab32d6208d219203d
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part04.pdf
    M docs/programmers/tutorials/workflows/part04.tex

  Log Message:
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  part04: Fix exercise numbering.


  Commit: 1b3c4b8bf1c5529dcd247523ba0a81aeb663af72
      
https://github.com/uzh/gc3pie/commit/1b3c4b8bf1c5529dcd247523ba0a81aeb663af72
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part05.pdf
    M docs/programmers/tutorials/workflows/part05.tex

  Log Message:
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  part05: Make Exercise 5.A more interesting. (Hopefully!)


  Commit: 1bf230a56770a1d5ce6c1b99ab461e5d4607e363
      
https://github.com/uzh/gc3pie/commit/1bf230a56770a1d5ce6c1b99ab461e5d4607e363
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    R docs/programmers/tutorials/workflows/part05.pdf
    R docs/programmers/tutorials/workflows/part05.tex
    A docs/programmers/tutorials/workflows/part06.pdf
    A docs/programmers/tutorials/workflows/part06.tex

  Log Message:
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  Rename part05 to part06.

Make room for a presentation on task resource requirements.


  Commit: 4087a78e8afe95ed9cd4bef4c4d11d8053cd6c2e
      
https://github.com/uzh/gc3pie/commit/4087a78e8afe95ed9cd4bef4c4d11d8053cd6c2e
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/index.rst
    M docs/programmers/tutorials/workflows/part06.pdf
    M docs/programmers/tutorials/workflows/part06.tex

  Log Message:
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  part06: Update numbering of exercises.


  Commit: 70742dfeaa76d90bc0abe7ac0e17b52321fc51ba
      
https://github.com/uzh/gc3pie/commit/70742dfeaa76d90bc0abe7ac0e17b52321fc51ba
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/index.rst
    A docs/programmers/tutorials/workflows/part05.pdf
    A docs/programmers/tutorials/workflows/part05.tex

  Log Message:
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  New part05 on application requirements.


  Commit: f908fa88dc5848331c710045d5b4b6c32dcd3600
      
https://github.com/uzh/gc3pie/commit/f908fa88dc5848331c710045d5b4b6c32dcd3600
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    A docs/programmers/tutorials/workflows/fig/arrow.fig
    M docs/programmers/tutorials/workflows/part06.pdf
    M docs/programmers/tutorials/workflows/part06.tex

  Log Message:
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  Finalize part 06


  Commit: 26dd3dbca15fe6dca990e019a90444a9a84d962c
      
https://github.com/uzh/gc3pie/commit/26dd3dbca15fe6dca990e019a90444a9a84d962c
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/index.rst
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    A 
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    A 
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    A docs/programmers/tutorials/workflows/fig/warholize-WarholizeWorkflow.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-WarholizeWorkflow.svg
    A docs/programmers/tutorials/workflows/fig/warholize-wkf.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-wkf.svg
    A docs/programmers/tutorials/workflows/fig/warholize-wkf1.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-wkf1.svg
    A docs/programmers/tutorials/workflows/fig/warholize-wkf2.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-wkf2.svg
    A docs/programmers/tutorials/workflows/fig/warholize-wkf2a.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-wkf2a.svg
    A docs/programmers/tutorials/workflows/fig/warholize-wkf3.pdf
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    A docs/programmers/tutorials/workflows/fig/warholized-lena.jpg
    A docs/programmers/tutorials/workflows/part07.pdf
    A docs/programmers/tutorials/workflows/part07.tex

  Log Message:
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  New part 07


  Commit: aca2a5894f6e8936aa9c711c466403b72bf06dc5
      
https://github.com/uzh/gc3pie/commit/aca2a5894f6e8936aa9c711c466403b72bf06dc5
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part04.tex

  Log Message:
  -----------
  part04: Fix BLAST invocation.

Need to use BLAST+, Debian/Ubuntu package `ncbi-blast+`.


  Commit: e5f1535fa6f5c3c3416409394068c279b1e9a91a
      
https://github.com/uzh/gc3pie/commit/e5f1535fa6f5c3c3416409394068c279b1e9a91a
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part06.tex

  Log Message:
  -----------
  part06: Fix typo.


  Commit: 0044a76f8aa3fa69181291f549ad320db8438f50
      
https://github.com/uzh/gc3pie/commit/0044a76f8aa3fa69181291f549ad320db8438f50
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-14 (Thu, 14 Jul 2016)

  Changed paths:
    A docs/programmers/tutorials/workflows/fig/cmyk.jpg
    A docs/programmers/tutorials/workflows/fig/cyan.jpg
    A docs/programmers/tutorials/workflows/fig/magenta.jpg
    A docs/programmers/tutorials/workflows/fig/yellow.jpg
    A docs/programmers/tutorials/workflows/part08.pdf
    A docs/programmers/tutorials/workflows/part08.tex
    A docs/programmers/tutorials/workflows/part09.pdf
    A docs/programmers/tutorials/workflows/part09.tex

  Log Message:
  -----------
  Add parts 8 and 9


  Commit: 76b755b1e0686199389291d60e250bbf32350376
      
https://github.com/uzh/gc3pie/commit/76b755b1e0686199389291d60e250bbf32350376
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-14 (Thu, 14 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part09.tex

  Log Message:
  -----------
  part09: Fix error in title.


  Commit: b5ba47be4a0a7cc08693a1b2bb7f0c9f6c76f3e5
      
https://github.com/uzh/gc3pie/commit/b5ba47be4a0a7cc08693a1b2bb7f0c9f6c76f3e5
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-14 (Thu, 14 Jul 2016)

  Changed paths:
    A docs/programmers/tutorials/workflows/part10.pdf
    A docs/programmers/tutorials/workflows/part10.tex

  Log Message:
  -----------
  New part 10 on DependentTaskCollections


  Commit: 754635f587b2438535b38afaa98a86cdbb2ef85a
      
https://github.com/uzh/gc3pie/commit/754635f587b2438535b38afaa98a86cdbb2ef85a
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-14 (Thu, 14 Jul 2016)

  Changed paths:
    A docs/programmers/tutorials/workflows/fig/3n+1.fig
    A docs/programmers/tutorials/workflows/fig/3n+1.pdf
    A docs/programmers/tutorials/workflows/fig/A.fig
    A docs/programmers/tutorials/workflows/fig/A.pdf
    A docs/programmers/tutorials/workflows/fig/S.fig
    A docs/programmers/tutorials/workflows/fig/S.pdf
    M docs/programmers/tutorials/workflows/part10.pdf
    M docs/programmers/tutorials/workflows/part10.tex

  Log Message:
  -----------
  New part 10: advanced workflow constructs


  Commit: 18438aee6313a57d541d49cc5e51d0ddac292563
      
https://github.com/uzh/gc3pie/commit/18438aee6313a57d541d49cc5e51d0ddac292563
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-15 (Fri, 15 Jul 2016)

  Changed paths:
    R docs/programmers/tutorials/workflows/lena.jpg

  Log Message:
  -----------
  Remove leftover `lena.jpg` file.


  Commit: 76d2781e83fe65c080952b4d6514a8ec7f0c31fb
      
https://github.com/uzh/gc3pie/commit/76d2781e83fe65c080952b4d6514a8ec7f0c31fb
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-07-15 (Fri, 15 Jul 2016)

  Changed paths:
    M docs/programmers/tutorials/index.rst

  Log Message:
  -----------
  Update index with the last slides of the "workflow" course.


  Commit: 28d1a19b74a0a8ed296f147124b897aa96c705ad
      
https://github.com/uzh/gc3pie/commit/28d1a19b74a0a8ed296f147124b897aa96c705ad
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-11-13 (Sun, 13 Nov 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part00.pdf
    M docs/programmers/tutorials/workflows/part00.tex
    M docs/publications/index.rst
    M docs/users/install.rst

  Log Message:
  -----------
  Replace Gmane link with Google groups web forum.

The Gmane web interface is down with no date known
for it to be back online.


  Commit: 67e30e94c493c1dacd0ddfef61bc0e7e2eab79d8
      
https://github.com/uzh/gc3pie/commit/67e30e94c493c1dacd0ddfef61bc0e7e2eab79d8
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-11-13 (Sun, 13 Nov 2016)

  Changed paths:
    A docs/programmers/tutorials/workflows/fig/gc3pie-running-1.pdf
    A docs/programmers/tutorials/workflows/fig/gc3pie-running-2.pdf
    A docs/programmers/tutorials/workflows/fig/gc3pie-running-3.pdf
    M docs/programmers/tutorials/workflows/part01.pdf
    M docs/programmers/tutorials/workflows/part01.tex

  Log Message:
  -----------
  part01: Add diagrams showing how GC3Pie operates.

Nicely-drawn diagrams should be credited to Tara von Grebel
and the UZH SIVIC scientific illustration service.


  Commit: b4a30742d8a196a6578bbb13e541781de2f2f6a3
      
https://github.com/uzh/gc3pie/commit/b4a30742d8a196a6578bbb13e541781de2f2f6a3
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-11-13 (Sun, 13 Nov 2016)

  Changed paths:
    A docs/programmers/tutorials/workflows/fig/butterfly.jpg
    A docs/programmers/tutorials/workflows/fig/gray-butterfly.jpg
    M docs/programmers/tutorials/workflows/part02.pdf
    M docs/programmers/tutorials/workflows/part02.tex

  Log Message:
  -----------
  Revise part02 of the "workflows" programmers' tutorial.

In particular, change the "Lena" picture with a picture of a butterfly.


  Commit: 40a611da10bc974533ff6bf0cd15bb7f47365ffc
      
https://github.com/uzh/gc3pie/commit/40a611da10bc974533ff6bf0cd15bb7f47365ffc
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-11-14 (Mon, 14 Nov 2016)

  Changed paths:
    A docs/programmers/tutorials/workflows/fig/rgb-butterfly.jpg
    A docs/programmers/tutorials/workflows/fig/warholized-butterfly.jpg
    M docs/programmers/tutorials/workflows/part02.pdf
    M docs/programmers/tutorials/workflows/part02.tex
    M docs/programmers/tutorials/workflows/part03.pdf
    M docs/programmers/tutorials/workflows/part03.tex
    M docs/programmers/tutorials/workflows/part04.pdf
    M docs/programmers/tutorials/workflows/part04.tex
    M docs/programmers/tutorials/workflows/part06.pdf
    M docs/programmers/tutorials/workflows/part06.tex
    M docs/programmers/tutorials/workflows/part07.pdf
    M docs/programmers/tutorials/workflows/part07.tex

  Log Message:
  -----------
  Replace image of "Lena" with photo of a butterfly.

Butterflies are non-controversial, aren't they?


  Commit: c42a19673d09720ad4dbedcf4b793275fb1ea4f7
      
https://github.com/uzh/gc3pie/commit/c42a19673d09720ad4dbedcf4b793275fb1ea4f7
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-11-14 (Mon, 14 Nov 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part02.pdf
    M docs/programmers/tutorials/workflows/part02.tex
    M docs/programmers/tutorials/workflows/part06.pdf
    M docs/programmers/tutorials/workflows/part06.tex

  Log Message:
  -----------
  Prepare for merging branch "training-july-2016" into the "master" branch.

Replace all links with links to the "master" branch.


  Commit: 847f4e89d2094d2bd507427e946c8c3cf0dad6f4
      
https://github.com/uzh/gc3pie/commit/847f4e89d2094d2bd507427e946c8c3cf0dad6f4
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-11-14 (Mon, 14 Nov 2016)

  Changed paths:
    M docs/programmers/tutorials/workflows/part04.pdf
    M docs/programmers/tutorials/workflows/part04.tex
    M docs/programmers/tutorials/workflows/solutions/ex4a.py
    M docs/programmers/tutorials/workflows/solutions/ex4b.py

  Log Message:
  -----------
  Revise part04 of the programmers' "workflow" tutorial.


  Commit: 8b4c312fb198657a7d764c5f94177395266b7347
      
https://github.com/uzh/gc3pie/commit/8b4c312fb198657a7d764c5f94177395266b7347
  Author: Riccardo Murri <riccardo.mu...@gmail.com>
  Date:   2016-11-14 (Mon, 14 Nov 2016)

  Changed paths:
    M docs/programmers/tutorials/bottom-up/gc3.sty
    M docs/programmers/tutorials/index.rst
    A docs/programmers/tutorials/workflows/Makefile
    A docs/programmers/tutorials/workflows/TEMPLATE.tex
    A docs/programmers/tutorials/workflows/beamerthemegc3.sty
    A docs/programmers/tutorials/workflows/downloads/argp.py
    A docs/programmers/tutorials/workflows/downloads/grayscale_app.py
    A docs/programmers/tutorials/workflows/downloads/ra.m
    A 
docs/programmers/tutorials/workflows/downloads/topblast/176279.9.PATRIC.faa
    A 
docs/programmers/tutorials/workflows/downloads/topblast/176280.10.PATRIC.faa
    A 
docs/programmers/tutorials/workflows/downloads/topblast/359786.13.PATRIC.faa
    A 
docs/programmers/tutorials/workflows/downloads/topblast/359787.11.PATRIC.faa
    A docs/programmers/tutorials/workflows/downloads/topblast/README.rst
    A docs/programmers/tutorials/workflows/fig/3n+1.fig
    A docs/programmers/tutorials/workflows/fig/3n+1.pdf
    A docs/programmers/tutorials/workflows/fig/A.fig
    A docs/programmers/tutorials/workflows/fig/A.pdf
    A docs/programmers/tutorials/workflows/fig/S.fig
    A docs/programmers/tutorials/workflows/fig/S.pdf
    A docs/programmers/tutorials/workflows/fig/arrow.fig
    A docs/programmers/tutorials/workflows/fig/butterfly.jpg
    A docs/programmers/tutorials/workflows/fig/cmyk.jpg
    A docs/programmers/tutorials/workflows/fig/cyan.jpg
    A docs/programmers/tutorials/workflows/fig/gc3pie-running-1.pdf
    A docs/programmers/tutorials/workflows/fig/gc3pie-running-2.pdf
    A docs/programmers/tutorials/workflows/fig/gc3pie-running-3.pdf
    A docs/programmers/tutorials/workflows/fig/gray-butterfly.jpg
    A docs/programmers/tutorials/workflows/fig/magenta.jpg
    A docs/programmers/tutorials/workflows/fig/rgb-butterfly.jpg
    A docs/programmers/tutorials/workflows/fig/states-NEW.pdf
    A docs/programmers/tutorials/workflows/fig/states-RUNNING.pdf
    A docs/programmers/tutorials/workflows/fig/states-STOPPED.pdf
    A docs/programmers/tutorials/workflows/fig/states-SUBMITTED.pdf
    A docs/programmers/tutorials/workflows/fig/states-TERMINATED.pdf
    A docs/programmers/tutorials/workflows/fig/states-TERMINATING.pdf
    A docs/programmers/tutorials/workflows/fig/states-UNKNOWN.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-TricolorizeImage.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-TricolorizeImage.svg
    A 
docs/programmers/tutorials/workflows/fig/warholize-TricolorizeMultipleImages.pdf
    A 
docs/programmers/tutorials/workflows/fig/warholize-TricolorizeMultipleImages.svg
    A docs/programmers/tutorials/workflows/fig/warholize-WarholizeWorkflow.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-WarholizeWorkflow.svg
    A docs/programmers/tutorials/workflows/fig/warholize-wkf.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-wkf.svg
    A docs/programmers/tutorials/workflows/fig/warholize-wkf1.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-wkf1.svg
    A docs/programmers/tutorials/workflows/fig/warholize-wkf2.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-wkf2.svg
    A docs/programmers/tutorials/workflows/fig/warholize-wkf2a.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-wkf2a.svg
    A docs/programmers/tutorials/workflows/fig/warholize-wkf3.pdf
    A docs/programmers/tutorials/workflows/fig/warholize-wkf3.svg
    A docs/programmers/tutorials/workflows/fig/warholized-butterfly.jpg
    A docs/programmers/tutorials/workflows/fig/warholized-lena.jpg
    A docs/programmers/tutorials/workflows/fig/yellow.jpg
    A docs/programmers/tutorials/workflows/gc3.sty
    A docs/programmers/tutorials/workflows/make_state_graph.py
    A docs/programmers/tutorials/workflows/part00.pdf
    A docs/programmers/tutorials/workflows/part00.tex
    A docs/programmers/tutorials/workflows/part01.pdf
    A docs/programmers/tutorials/workflows/part01.tex
    A docs/programmers/tutorials/workflows/part02.pdf
    A docs/programmers/tutorials/workflows/part02.tex
    A docs/programmers/tutorials/workflows/part03.pdf
    A docs/programmers/tutorials/workflows/part03.tex
    A docs/programmers/tutorials/workflows/part04.pdf
    A docs/programmers/tutorials/workflows/part04.tex
    A docs/programmers/tutorials/workflows/part05.pdf
    A docs/programmers/tutorials/workflows/part05.tex
    A docs/programmers/tutorials/workflows/part06.pdf
    A docs/programmers/tutorials/workflows/part06.tex
    A docs/programmers/tutorials/workflows/part07.pdf
    A docs/programmers/tutorials/workflows/part07.tex
    A docs/programmers/tutorials/workflows/part08.pdf
    A docs/programmers/tutorials/workflows/part08.tex
    A docs/programmers/tutorials/workflows/part09.pdf
    A docs/programmers/tutorials/workflows/part09.tex
    A docs/programmers/tutorials/workflows/part10.pdf
    A docs/programmers/tutorials/workflows/part10.tex
    A docs/programmers/tutorials/workflows/solutions/ex2a.py
    A docs/programmers/tutorials/workflows/solutions/ex2b.py
    A docs/programmers/tutorials/workflows/solutions/ex2c.py
    A docs/programmers/tutorials/workflows/solutions/ex4a.py
    A docs/programmers/tutorials/workflows/solutions/ex4b.py
    A docs/programmers/tutorials/workflows/uzh_logo_e_pos.pdf
    M docs/publications/index.rst
    M docs/users/install.rst
    M gc3libs/cmdline.py
    M gc3libs/utils.py
    M gc3utils/commands.py

  Log Message:
  -----------
  Merge branch 'training-july-2016'

Make training material and additional documentation
available to all users.  More revisions to come as
the 2nd installment of the training progresses.


Compare: https://github.com/uzh/gc3pie/compare/dd37c5a8056a...8b4c312fb198

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