Branch: refs/heads/master
Home: https://github.com/uzh/gc3pie
Commit: ee0382ce0f046bd5c63c13de87aed2d5bfb5289e
https://github.com/uzh/gc3pie/commit/ee0382ce0f046bd5c63c13de87aed2d5bfb5289e
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-01 (Tue, 01 Aug 2017)
Changed paths:
M gc3libs/__init__.py
M gc3libs/application/__init__.py
M gc3libs/application/apppot.py
M gc3libs/application/demo.py
M gc3libs/application/gamess.py
M gc3libs/application/rosetta.py
M gc3libs/application/turbomole.py
M gc3libs/authentication/__init__.py
M gc3libs/authentication/ec2.py
M gc3libs/authentication/openstack.py
M gc3libs/authentication/ssh.py
M gc3libs/backends/__init__.py
M gc3libs/backends/batch.py
M gc3libs/backends/ec2.py
M gc3libs/backends/lsf.py
M gc3libs/backends/noop.py
M gc3libs/backends/openstack.py
M gc3libs/backends/pbs.py
M gc3libs/backends/sge.py
M gc3libs/backends/shellcmd.py
M gc3libs/backends/slurm.py
M gc3libs/backends/tests/faketransport.py
M gc3libs/backends/tests/test_ec2.py
M gc3libs/backends/tests/test_generic_backend.py
M gc3libs/backends/tests/test_lsf.py
M gc3libs/backends/tests/test_noop.py
M gc3libs/backends/tests/test_openstack.py
M gc3libs/backends/tests/test_pbs.py
M gc3libs/backends/tests/test_sge.py
M gc3libs/backends/tests/test_shellcmd.py
M gc3libs/backends/tests/test_slurm.py
M gc3libs/backends/tests/test_transport.py
M gc3libs/backends/transport.py
M gc3libs/backends/vmpool.py
M gc3libs/config.py
M gc3libs/debug.py
M gc3libs/exceptions.py
M gc3libs/optimizer/__init__.py
M gc3libs/optimizer/dif_evolution.py
M gc3libs/optimizer/drivers.py
M gc3libs/optimizer/extra.py
M gc3libs/persistence/__init__.py
M gc3libs/persistence/accessors.py
M gc3libs/persistence/filesystem.py
M gc3libs/persistence/idfactory.py
M gc3libs/persistence/serialization.py
M gc3libs/persistence/sql.py
M gc3libs/persistence/store.py
M gc3libs/poller.py
M gc3libs/quantity.py
M gc3libs/session.py
M gc3libs/template.py
M gc3libs/tests/scripts/simpledaemon.py
M gc3libs/tests/scripts/simplescript.py
M gc3libs/tests/test_Application.py
M gc3libs/tests/test_ParallelTaskCollection.py
M gc3libs/tests/test_RetryableTask.py
M gc3libs/tests/test_SequentialTaskCollection.py
M gc3libs/tests/test_Task.py
M gc3libs/tests/test_cmdline.py
M gc3libs/tests/test_issue_335.py
M gc3libs/tests/test_poller.py
M gc3libs/tests/test_quantity_division.py
M gc3libs/tests/test_session.py
M gc3libs/tests/test_utils.py
M gc3libs/url.py
M gc3libs/utils.py
M gc3libs/workflow.py
Log Message:
-----------
Update license blurb text.
I guess these days people would rather open a URL than sending paper mail to the
FSF...
Commit: ac930a5cff6373fa7a081b9d014d60f031440faa
https://github.com/uzh/gc3pie/commit/ac930a5cff6373fa7a081b9d014d60f031440faa
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-01 (Tue, 01 Aug 2017)
Changed paths:
M gc3libs/tests/test_core.py
Log Message:
-----------
Skip "bad auth" tests when `GC3PIE_RESOURCE_INIT_ERRORS_ARE_FATAL` is set.
Commit: 281f8b370baacd9e59cc2d718293da4e75de1682
https://github.com/uzh/gc3pie/commit/281f8b370baacd9e59cc2d718293da4e75de1682
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-01 (Tue, 01 Aug 2017)
Changed paths:
M setup.py
Log Message:
-----------
Add `pytest-catchlog` to the Python modules required for testing.
Without log capture, it's basically impossible to debug GC3Pie...
Commit: 22ab6f7d94f96d2e98bb3367aae05fb2b5525f21
https://github.com/uzh/gc3pie/commit/22ab6f7d94f96d2e98bb3367aae05fb2b5525f21
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-01 (Tue, 01 Aug 2017)
Changed paths:
M gc3libs/backends/transport.py
Log Message:
-----------
Make `Transport.makedirs()` log when entering the function.
Commit: 838281b02d71d2524d7fcbef586f5fa695da66c0
https://github.com/uzh/gc3pie/commit/838281b02d71d2524d7fcbef586f5fa695da66c0
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-01 (Tue, 01 Aug 2017)
Changed paths:
M gc3libs/config.py
Log Message:
-----------
Micro-optimization in `gc3libs.config._parse_architecture()`
Avoid using a locally-constructed function when a top-level one will do.
Commit: 48298618b8608e69057952813a2e48c892916f69
https://github.com/uzh/gc3pie/commit/48298618b8608e69057952813a2e48c892916f69
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-01 (Tue, 01 Aug 2017)
Changed paths:
M gc3libs/backends/tests/test_shellcmd.py
Log Message:
-----------
Cosmetic changes.
Commit: 2ac104d0f3305c8ed079a31ec0e59f4ae5793f77
https://github.com/uzh/gc3pie/commit/2ac104d0f3305c8ed079a31ec0e59f4ae5793f77
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-01 (Tue, 01 Aug 2017)
Changed paths:
M gc3libs/backends/transport.py
Log Message:
-----------
Avoid logging calls to `LocalTransport.connect()`
A method that does nothing should also log nothing...
Commit: 7ff59bca57023ef9894b80cd7d5dccde4ddfcbc3
https://github.com/uzh/gc3pie/commit/7ff59bca57023ef9894b80cd7d5dccde4ddfcbc3
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-01 (Tue, 01 Aug 2017)
Changed paths:
M gc3libs/backends/shellcmd.py
M gc3libs/backends/tests/test_shellcmd.py
R gc3libs/etc/downloader.py
A gc3libs/etc/mover.py
Log Message:
-----------
Major code cleanup in `gc3libs/backends/shellcmd.py`.
No functionality should have been added or removed, but the code is
now more (and, hopefully, better) commented and separated into
sections / functional blocks, which should make it possible to
disentangle the hairy logic somewhat...
In particular, the skipped tests in `test_shellcmd` now work correctly
again.
Commit: fa374f8190e5252711a19a1b98a877805e6f12b6
https://github.com/uzh/gc3pie/commit/fa374f8190e5252711a19a1b98a877805e6f12b6
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-01 (Tue, 01 Aug 2017)
Changed paths:
M gc3libs/backends/shellcmd.py
A gc3libs/backends/tests/test_machine.py
Log Message:
-----------
ShellcmdLrms: Kill all children processes of the given task.
Fixes #458
Commit: f2bff0ef5d3587a71456a5067d4bf6fed2f77fc5
https://github.com/uzh/gc3pie/commit/f2bff0ef5d3587a71456a5067d4bf6fed2f77fc5
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-01 (Tue, 01 Aug 2017)
Changed paths:
M gc3libs/backends/shellcmd.py
Log Message:
-----------
Do not log "Checking status of the following PIDs ..." if there is nothing to
check.
Commit: b20456d8da51041a0d8e843a63837d6c142508d2
https://github.com/uzh/gc3pie/commit/b20456d8da51041a0d8e843a63837d6c142508d2
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-02 (Wed, 02 Aug 2017)
Changed paths:
M examples/grun.py
M examples/warholize.py
M gc3libs/cmdline.py
M gc3libs/workflow.py
Log Message:
-----------
Cosmetic changes to examples.
Commit: 3c024f3ccf4bc830c1869b74dc155fb7d6e3a4ee
https://github.com/uzh/gc3pie/commit/3c024f3ccf4bc830c1869b74dc155fb7d6e3a4ee
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-02 (Wed, 02 Aug 2017)
Changed paths:
M gc3libs/backends/transport.py
Log Message:
-----------
Fix execution of detached commands in `LocalTransport`.
I'm surprised that *anything* was actually working...
Commit: 7ed7f126ccef4368149b9b8d7abfceb38cadf9e0
https://github.com/uzh/gc3pie/commit/7ed7f126ccef4368149b9b8d7abfceb38cadf9e0
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-02 (Wed, 02 Aug 2017)
Changed paths:
M gc3libs/backends/shellcmd.py
Log Message:
-----------
Fix errors in `ShellcmdLrms`.
In particular:
- fix "KeyError: <PID>" when running `gkill`
- fix "global name 'available_memory' is not defined"
- fix wrong argument count error when calling
`_Machine.get_process_running_time`
Commit: 0cd7edc789c47c865220492220c0ba72c68d750f
https://github.com/uzh/gc3pie/commit/0cd7edc789c47c865220492220c0ba72c68d750f
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-02 (Wed, 02 Aug 2017)
Changed paths:
M gc3libs/backends/shellcmd.py
Log Message:
-----------
Make "Recovered resource information ..." log message more exact.
Commit: c5482c4e53eb3e8b89dcd1465dc4987f358c4309
https://github.com/uzh/gc3pie/commit/c5482c4e53eb3e8b89dcd1465dc4987f358c4309
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-02 (Wed, 02 Aug 2017)
Changed paths:
M gc3libs/backends/shellcmd.py
Log Message:
-----------
ShellcmdLrms: If "PIDfile" is empty, wait and retry.
It seems that it can happen that we read the PIDfile but `.read()`
returns an empty string. Just retry...
Commit: 333ebe49dfb24c2fcd65d5c27f4f8e8ada86d286
https://github.com/uzh/gc3pie/commit/333ebe49dfb24c2fcd65d5c27f4f8e8ada86d286
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-02 (Wed, 02 Aug 2017)
Changed paths:
M gc3libs/backends/shellcmd.py
Log Message:
-----------
ShellcmdLrms: Fix "global name 'pid_txt' is not defined"
Commit: 2a887b905d00e5b0fb5e07b3593cd9fc799a0ca8
https://github.com/uzh/gc3pie/commit/2a887b905d00e5b0fb5e07b3593cd9fc799a0ca8
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-02 (Wed, 02 Aug 2017)
Changed paths:
M gc3libs/backends/shellcmd.py
Log Message:
-----------
ShellcmdLrms: Ensure transport is connected when init'ing `.resource_dir`
Commit: 1f15c965765d5ee5e4b5e37c00c12e0316b49f4e
https://github.com/uzh/gc3pie/commit/1f15c965765d5ee5e4b5e37c00c12e0316b49f4e
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-03 (Thu, 03 Aug 2017)
Changed paths:
M gc3libs/exceptions.py
Log Message:
-----------
Make `TransportError` an instance of Python's built-in `EnvironmentError`
Commit: e4c4396c9883d3795f9543d9f988ea32eee1d613
https://github.com/uzh/gc3pie/commit/e4c4396c9883d3795f9543d9f988ea32eee1d613
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-03 (Thu, 03 Aug 2017)
Changed paths:
M gc3libs/backends/shellcmd.py
Log Message:
-----------
ShellcmdLrms: Deal with empty "wrapper output" files.
Commit: f5bb2f71c8634c6737384e16294036fae909f886
https://github.com/uzh/gc3pie/commit/f5bb2f71c8634c6737384e16294036fae909f886
Author: Riccardo Murri <riccardo.mu...@gmail.com>
Date: 2017-08-09 (Wed, 09 Aug 2017)
Changed paths:
M gc3libs/core.py
Log Message:
-----------
Properly remove tasks from `Engine` when `forget_terminated` is True.
Compare: https://github.com/uzh/gc3pie/compare/9d172840cdb6...f5bb2f71c863
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