Hi,

I repeated the steps which are described in this question 
https://gis.stackexchange.com/questions/317916/gdalbuiltvrt-output-is-different-than-the-source-images-when-using-dstalpha
 and it indeed seems that transparency that is defined with an alpha band in 
original images is lost if I read data through VRT. I wonder if something 
similar happens than in this issue 
https://github.com/mapbox/rasterio/issues/1454 with 
GDALRasterBand::GetMaskBand().

-Jukka Rahkonen-
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