[snip]
>Yeah, sure. This is no problem as long as you are aware of it. But I
>just spent one day looking for errors in my netlister-backend.
>I still think this is a strange behavior.
I spent a little time looking at this during the code sprint.
This is a limitation of how gnetlist finds nets when dealing with
hierarchies. I have filed (Bug#1529418) so that this bug gets addressed
at some point, but in the mean-time, please use a zero ohm resistor to
short the pins/nets together.
-Ales
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