Here I am going further from my area of expertise so please buyer beware.
The basic indexing options provide for a limited set of indexing types.
Beyond that there are a lot of options to extend these to things like wildcard 
matches, range indexes (must be type aware to do that)
some provide more capability in searching and others are performance tradeoffs 
(load time vs execution time, space vs time etc).
But the default minimum case is that all element values and attribute values 
get at least an exact match               index without having to do anything 
special.
It does take a while to read up and experiment on these options to learn the 
details.

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From: [email protected] 
[mailto:[email protected]] On Behalf Of Todd Gochenour
Sent: Tuesday, February 21, 2012 10:52 AM
To: MarkLogic Developer Discussion
Subject: Re: [MarkLogic Dev General] Processing Large Documents?

Great.  Good to hear that the database elements and attributes are indexed by 
default.  eXistDB by default does the same.

I'm looking at the Information Studio/Application Services/Database Settings 
page and wondering then what these options provide in addition to the default 
index.
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