David,

More than likely is due to how the word-queries are resolved and phrase-through 
elements defined on the database. By changing the namespace to html and 
assuming the database running the query use phrase throughs for spans resolves 
this issue.  Remember that if the blue elements run before green then a 
boundary is created that causes the span to act as a word-boundary.  By 
tweaking the query a bit and adding html namespaces, you see that it will 
resolve correctly against the "Documents" database.  Please make sure you have 
phrase-throughs enabled on your database if you find the results don't come out 
as expected.

Another technique is to just put an anchor at the end of the term as an icon so 
that you don't get <a href/> overlaps

So you could do something like this 

tmpdoc,cts:or-query($terms ! 
cts:word-query(.,"punctuation-sensitive")),($cts:text ,<span 
xmlns="http://www.w3.org/1999/xhtml"; class="person or thing" 
style="color:{$key}"></span>)))

Here is the corrected code and results

let $doc := <p xmlns="http://www.w3.org/1999/xhtml";> Google Inc. is an American 
multinational corporation specializing in Internet-related services and 
products. 
These include search, cloud computing, software and online advertising 
technologies.[7] Most of its profits are derived from AdWords.[8][9] Google was 
founded by Larry Page and Sergey Brin while they were Ph.D. students at 
Stanford University. 
Together they own about 16 percent of its shares. They incorporated Google as a 
privately held company on September 4, 1998. 
An initial public offering followed on August 19, 2004. Its mission statement 
from the outset was "to organize the world's information and make it 
universally accessible and useful",[10] and its unofficial slogan was "Don't be 
evil".[11][12] In 2006 Google moved to headquarters in Mountain View, 
California, nicknamed the Googleplex.
Rapid growth since incorporation has triggered a chain of products, 
acquisitions and partnerships beyond Google's core search engine. 
It offers online productivity software including email (Gmail), an office suite 
(Google Drive), and social networking (Google+). 
Desktop products include applications for web browsing, organizing and editing 
photos, and instant messaging. 
The company leads the development of the Android mobile operating system and 
the browser-only Chrome OS[13] for a specialized type of netbook known as a 
Chromebook. 
Google has moved increasingly into communications hardware: it partners with 
major electronics manufacturers in production of its high-end Nexus devices and 
acquired Motorola Mobility in May 2012.[14] In 2012, a fiber-optic 
infrastructure was installed in Kansas City to facilitate a Google Fiber 
broadband service.[15] The corporation has been estimated to run more than one 
million servers in data centers around the world[16] and to process over one 
billion search requests[17] and about 24 petabytes of user-generated data each 
day.[18][19][20][21] In December 2012 Alexa listed google.com as the most 
visited website in the world. Numerous Google sites in other languages figure 
in the top one hundred, as do several other Google-owned sites such as YouTube 
and Blogger.[22] Its market dominance has led to criticism over issues 
including copyright, censorship, and privacy.[23][24] </p>

let $tmpdoc := $doc
let $map := map:map()
let $_ := (
  map:put($map,"blue",("Google","Google Inc.","YouTube", "Stanford 
University","Motorola")),
  map:put($map,"red",("Larry Page","Sergey Brin")),
  map:put($map,"green",("Android","Chrome","Google+","Gmail"))
)
let $highlight :=
 for $key in map:keys($map)
 let $terms := map:get($map,$key)
 return
   xdmp:set($tmpdoc,cts:highlight($tmpdoc,cts:or-query($terms ! 
cts:word-query(.,"punctuation-sensitive")),<span 
xmlns="http://www.w3.org/1999/xhtml"; style="color:{$key}">{$cts:text}</span>))
return
 $tmpdoc

[Returns]
...and social networking (<span style="color:blue"><span 
style="color:green">Google</span></span><span style="color:green">+</span>).

   

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