Hi Rajesh, "Have seen the code implemented and $ideal-triples-per-doc := 100; if the count can be customizable in future that would be really great"
What's the rationale for this request? We've as of yet found no reason to change this number; it's a tradeoff between fragment size (not too small) and size of updates (not too big), and nobody has found a way to measure a better number. I suspect that if you want to change this value, you may be thinking it's used for something that it's not. If you're using managed triples, pay no attention to the documents -- that's the rule of thumb. Charles ________________________________ From: [email protected] [[email protected]] on behalf of Rajesh Kumar [[email protected]] Sent: Tuesday, October 04, 2016 3:02 AM To: [email protected] Subject: Re: [MarkLogic Dev General] General Digest, Vol 148, Issue 1 Hi Ed Outhwaite, Yes the for every rdf-load the documents are getting created even the triple exists. Tested multiple times. But the Sparql engine is working perfectly, it is rendering the correct results. Have seen the code implemented and $ideal-triples-per-doc := 100; if the count can be customizable in future that would be really great :) Regards, Rajesh On Mon, Oct 3, 2016 at 7:38 PM, <[email protected]<mailto:[email protected]>> wrote: Send General mailing list submissions to [email protected]<mailto:[email protected]> To subscribe or unsubscribe via the World Wide Web, visit http://developer.marklogic.com/mailman/listinfo/general or, via email, send a message with subject or body 'help' to [email protected]<mailto:[email protected]> You can reach the person managing the list at [email protected]<mailto:[email protected]> When replying, please edit your Subject line so it is more specific than "Re: Contents of General digest..." Today's Topics: 1. duplicate triplestore files when loaded using rdf and mlcp (Rajesh Kumar) 2. Re: duplicate triplestore files when loaded using rdf and mlcp (Geert Josten) 3. Re: duplicate triplestore files when loaded using rdf and mlcp (Ed Outhwaite) 4. Re: General Digest, Vol 147, Issue 53 (Shiv Shankar) ---------------------------------------------------------------------- Message: 1 Date: Mon, 3 Oct 2016 17:16:26 +0530 From: Rajesh Kumar <[email protected]<mailto:[email protected]>> Subject: [MarkLogic Dev General] duplicate triplestore files when loaded using rdf and mlcp To: [email protected]<mailto:[email protected]> Message-ID: <cagcyhovayc+gpfn9cmzs5guxg1zpfpnrcgwoi7aomf60ogt...@mail.gmail.com<mailto:cagcyhovayc%[email protected]>> Content-Type: text/plain; charset="utf-8" Hi Team, When using sem:rdf-load and loading the turtle ( .ttl ) file , i observed multiple triple store files are getting created and the same with mlcp as well. But my Sparql query is working as expected eventhough there ae multiple triplestore files exist in database ( I guess that will be taken care by triple store.) Load query: import module namespace sem = "http://marklogic.com/semantics"; at "/MarkLogic/semantics.xqy"; sem:rdf-load( 'D:\rajesh\poc\pearson_HED\abc.ttl', ("turtle","override-graph=http://www.abc.org/ontologies/abc";), (), xdmp:default-permissions() ) Kindly let me know is there any way that we can restrict duplicate files in db. Tried with both graph and default options as well. Thanks & Regards, Rajesh -------------- next part -------------- An HTML attachment was scrubbed... URL: http://developer.marklogic.com/pipermail/general/attachments/20161003/18c4dddb/attachment-0001.html ------------------------------ Message: 2 Date: Mon, 3 Oct 2016 12:18:51 +0000 From: Geert Josten <[email protected]<mailto:[email protected]>> Subject: Re: [MarkLogic Dev General] duplicate triplestore files when loaded using rdf and mlcp To: MarkLogic Developer Discussion <[email protected]<mailto:[email protected]>> Message-ID: <d418187a.e86f9%[email protected]<mailto:d418187a.e86f9%[email protected]>> Content-Type: text/plain; charset="windows-1252" Hi Rajesh, If you load the same ttl file 5 times, you will have 5 copies of the same triples in the database. MarkLogic simply persists what you ask it to persist. They also occur multiple times in the triple index (since they are linked to different fragments), but are deduplicated automatically by the SPARQL engine. If you don?t want them inserted multiple times, you?ll have to find a way of preventing to insert them. Perhaps SPARQL Update could be a solution? Cheers From: <[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>> on behalf of Rajesh Kumar <[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>> Reply-To: MarkLogic Developer Discussion <[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>> Date: Monday, October 3, 2016 at 1:46 PM To: "[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>" <[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>> Subject: [MarkLogic Dev General] duplicate triplestore files when loaded using rdf and mlcp Hi Team, When using sem:rdf-load and loading the turtle ( .ttl ) file , i observed multiple triple store files are getting created and the same with mlcp as well. But my Sparql query is working as expected eventhough there ae multiple triplestore files exist in database ( I guess that will be taken care by triple store.) Load query: import module namespace sem = "http://marklogic.com/semantics"; at "/MarkLogic/semantics.xqy"; sem:rdf-load( 'D:\rajesh\poc\pearson_HED\abc.ttl', ("turtle","override-graph=http://www.abc.org/ontologies/abc";), (), xdmp:default-permissions() ) Kindly let me know is there any way that we can restrict duplicate files in db. Tried with both graph and default options as well. Thanks & Regards, Rajesh -------------- next part -------------- An HTML attachment was scrubbed... URL: http://developer.marklogic.com/pipermail/general/attachments/20161003/c8a7077c/attachment-0001.html ------------------------------ Message: 3 Date: Mon, 3 Oct 2016 12:27:01 +0000 From: Ed Outhwaite <[email protected]<mailto:[email protected]>> Subject: Re: [MarkLogic Dev General] duplicate triplestore files when loaded using rdf and mlcp To: MarkLogic Developer Discussion <[email protected]<mailto:[email protected]>> Message-ID: <d4180b1f.2e37c%[email protected]<mailto:d4180b1f.2e37c%[email protected]>> Content-Type: text/plain; charset="us-ascii" Hi Rajesh, Are you sure that there are duplicate triples ? For performance reasons, the triples are split into blocks (currently around 100 triples), with each block being loaded into its own document. See the semantics guide for more information https://docs.marklogic.com/guide/semantics/loading#id_81259 Regards, Ed Outhwaite Senior Consultant From: <[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>> on behalf of Rajesh Kumar <[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>> Reply-To: MarkLogic Developer Discussion <[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>> Date: Monday, October 3, 2016 at 12:46 PM To: "[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>" <[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>> Subject: [MarkLogic Dev General] duplicate triplestore files when loaded using rdf and mlcp Hi Team, When using sem:rdf-load and loading the turtle ( .ttl ) file , i observed multiple triple store files are getting created and the same with mlcp as well. But my Sparql query is working as expected eventhough there ae multiple triplestore files exist in database ( I guess that will be taken care by triple store.) Load query: import module namespace sem = "http://marklogic.com/semantics"; at "/MarkLogic/semantics.xqy"; sem:rdf-load( 'D:\rajesh\poc\pearson_HED\abc.ttl', ("turtle","override-graph=http://www.abc.org/ontologies/abc";), (), xdmp:default-permissions() ) Kindly let me know is there any way that we can restrict duplicate files in db. Tried with both graph and default options as well. Thanks & Regards, Rajesh -------------- next part -------------- An HTML attachment was scrubbed... URL: http://developer.marklogic.com/pipermail/general/attachments/20161003/56393c2d/attachment-0001.html ------------------------------ Message: 4 Date: Mon, 3 Oct 2016 10:08:02 -0400 From: Shiv Shankar <[email protected]<mailto:[email protected]>> Subject: Re: [MarkLogic Dev General] General Digest, Vol 147, Issue 53 To: [email protected]<mailto:[email protected]>, [email protected]<mailto:[email protected]> Message-ID: <cafyr2h6c2aoy79rhmmjdzxepjstyonxabn0yr+kzkjzyl4p...@mail.gmail.com<mailto:cafyr2h6c2aoy79rhmmjdzxepjstyonxabn0yr%[email protected]>> Content-Type: text/plain; charset="utf-8" Hi Justin, Here is the actual code that returns XDMP-CONFLICTINGUPDATES Error:. --- declareUpdate(); var mainDataResponse = rawColls.documents() .where(rawColls.byExample({personId: id})) .result('iterator'); for (var result of mainDataResponse.results) { var normalizedViewObj = cts.doc(matViewUri).toObject(); var matOriginalDoc = cts.doc(matViewUri); var dateNow =new Date().toUTCString(); // if (doc.firstname !=null) normalizedViewObj.firstName = result.document.firstname; // if (doc.lastName !=null) normalizedViewObj.lastName = result.document.lastname; // if (doc.dateOfBirth !=null) normalizedViewObj.dateOfBirth = result.document.dob; xdmp.nodeReplace(cts.doc(matViewUri),normalizedViewObj), normalizedViewObj = null; } --- On Thu, Sep 29, 2016 at 3:00 PM, <[email protected]<mailto:[email protected]>> wrote: > Send General mailing list submissions to > > [email protected]<mailto:[email protected]> > > To subscribe or unsubscribe via the World Wide Web, visit > http://developer.marklogic.com/mailman/listinfo/general > or, via email, send a message with subject or body 'help' to > > [email protected]<mailto:[email protected]> > > You can reach the person managing the list at > > [email protected]<mailto:[email protected]> > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of General digest..." > > > Today's Topics: > > 1. Re: General Digest, Vol 147, Issue 51 (Justin Makeig) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Thu, 29 Sep 2016 16:32:44 +0000 > From: Justin Makeig > <[email protected]<mailto:[email protected]>> > Subject: Re: [MarkLogic Dev General] General Digest, Vol 147, Issue 51 > To: Shiv Shankar > <[email protected]<mailto:[email protected]>> > Cc: "[email protected]<mailto:[email protected]>" > > <[email protected]<mailto:[email protected]>> > Message-ID: > <[email protected]<mailto:[email protected]>> > Content-Type: text/plain; charset="us-ascii" > > Can you show your actual code? > > Justin > > > -- > Justin Makeig > Director, Product Management > MarkLogic > [email protected]<mailto:[email protected]> > > > > On Sep 29, 2016, at 7:09 AM, Shiv Shankar > > <[email protected]<mailto:[email protected]>> > wrote: > > > > HI Justin, > > Thanks for your quick reply. However, I used both > declareUpdate({explicitCommit: true}); and declareUpdate(); Still same > issue. > > > > I am just reading from one collection and updating into another document > in a different collection. I managed with insertDocument, but this over > writes the docs which I don't want. I just want to update the attributes ( > it is like UPDATE SET field1:=value, field2=value in loop in oracle world) > > > > Note: I used lock/unlock options, but getting no lock on that target > record. I used isolation level as part of eval. Couldn't get through it. > > XDMP-CONFLICTINGUPDATES: xdmp.eval("//{explicitCommit: > true}\ndeclareUpdate(); \nvar json = \"/Mark...", {}, <options > xmlns="xdmp:eval"><database>67298589469423423423</database><root>/</root><isolation...</options>) > --Conflicting updates xdmp.nodeReplace(cts.doc(" > > > > > > Any thoughts? > > > > On Thu, Sep 29, 2016 at 7:55 AM, <general-request@developer. > marklogic.com<http://marklogic.com>> wrote: > > Send General mailing list submissions to > > > > [email protected]<mailto:[email protected]> > > > > To subscribe or unsubscribe via the World Wide Web, visit > > http://developer.marklogic.com/mailman/listinfo/general > > or, via email, send a message with subject or body 'help' to > > > > [email protected]<mailto:[email protected]> > > > > You can reach the person managing the list at > > > > [email protected]<mailto:[email protected]> > > > > When replying, please edit your Subject line so it is more specific > > than "Re: Contents of General digest..." > > > > > > Today's Topics: > > > > 1. Re: XDMP-CONFLICTINGUPDATES: while using xdmp.nodeReplace > > (Justin Makeig) > > 2. Re: mlcp Transaction Errors - SVC-EXTIME and XDMP-NOTXN #CGO# > > (Jain, Abhishek) > > > > > > ---------------------------------------------------------------------- > > > > Message: 1 > > Date: Wed, 28 Sep 2016 21:02:26 +0000 > > From: Justin Makeig > > <[email protected]<mailto:[email protected]>> > > Subject: Re: [MarkLogic Dev General] XDMP-CONFLICTINGUPDATES: while > > using xdmp.nodeReplace > > To: MarkLogic Developer Discussion > > <[email protected]<mailto:[email protected]>> > > Message-ID: > > <[email protected]<mailto:[email protected]>> > > Content-Type: text/plain; charset="us-ascii" > > > > The general pattern for doing updates on persisted JSON documents in > JavaScript is to > > 1) get the document > > 2) turn it into an object > > 3) update the object > > 4) replace the document node with the updated object > > > > Here's an example that updates the `balance` property of every document > in the `accounts` collection: > > > > declareUpdate(); > > for(var doc of fn.collection('accounts')) { > > var account = doc.toObject(); > > account.balance = account.balance * 1.05; > > xdmp.nodeReplace(doc, account); > > } > > > > Note that you also need a declareUpdate(). The transaction is committed > (or rolledback) automatically, so you don't need the xdmp.commit(). > > > > Justin > > > > -- > > Justin Makeig > > Director, Product Management > > MarkLogic > > [email protected]<mailto:[email protected]> > > > > > On Sep 28, 2016, at 1:46 PM, Shiv Shankar > > > <[email protected]<mailto:[email protected]>> > wrote: > > > > > > Hi Rob, > > > Thanks for quick reply, > > > > > > Here is the sample scenario. > > > > > > I would be building random data and put in to newObjData in a for loop. > > > > > > 01.json = {"firstName": "abc", "lastName": "xyz"} > > > > > > newObjectData.firstName= "Donald"; > > > > > > for Loop > > > { > > > xdmp.nodeReplace(cts.doc("/test/01.json"),newObjectData); > > > xdmp.commit(); > > > } > > > > > > > > > > > > > > > > > > On Wed, Sep 28, 2016 at 4:37 PM, Rob Szkutak < > [email protected]<mailto:[email protected]>> wrote: > > > Hi, > > > > > > Do you have a reproducible case of this I could look at? > > > > > > Best, > > > Rob > > > > > > Rob Szkutak > > > Senior Consultant > > > MarkLogic Corporation > > > [email protected]<mailto:[email protected]> > > > www.marklogic.com<http://www.marklogic.com> > > > > > > From: Shiv Shankar > > > [[email protected]<mailto:[email protected]>] > > > Sent: Wednesday, September 28, 2016 3:35 PM > > > To: > > > [email protected]<mailto:[email protected]>; > > > Rob Szkutak > > > Subject: XDMP-CONFLICTINGUPDATES: while using xdmp.nodeReplace > > > > > > Hi Rob, > > > > > > I am getting XDMP-CONFLICTINGUPDATES: while using xdmp.nodeReplace to > update JSON attributes in FOR loop, instead of over-writing entire > document. Any advice. > > > > > > BTW, I used xdmp.eval, but it is not identifying the java script > variables. > > > > > > Thanks > > > ShivShankar. > > > > > > _______________________________________________ > > > General mailing list > > > [email protected]<mailto:[email protected]> > > > Manage your subscription at: > > > http://developer.marklogic.com/mailman/listinfo/general > > > > > > > > > > ------------------------------ > > > > Message: 2 > > Date: Thu, 29 Sep 2016 11:54:54 +0000 > > From: "Jain, Abhishek" > > <[email protected]<mailto:[email protected]>> > > Subject: Re: [MarkLogic Dev General] mlcp Transaction Errors - > > SVC-EXTIME and XDMP-NOTXN #CGO# > > To: MarkLogic Developer Discussion > > <[email protected]<mailto:[email protected]>> > > Message-ID: > > <5A37843F322E824AA0D8359ED88CD01F276FF29D@IN-HYD-DAGND2. > corp.capgemini.com<http://corp.capgemini.com>> > > > > Content-Type: text/plain; charset="utf-8" > > > > Great , Expected !! As it was pretty optimized MLCP Query. > > BTW, addressing the second part of your question about logging > errors/failed files ? > > I?m also working on similar stuff, this can be done in three ways ? > > > > > > 1. Modifying MLCP library to write all the failed IDs and > corresponding files in a separate log file > > > > However that requires additional work(java program or x-query ) program > to create new input files of failed record.(Tedious) > > > > 2. Second way, we need to write a pre-commit trigger, and attach > to database. In pre-commit action module we can > > > > Write custom logs. > > > > 3. Similar module can also be written for MLCP Transform. > > > > > > > > All three approaches have limitations , which one to choose depends on > what exactly we want to log. > > > > In my case it pre-commit solution does well. > > > > I wonder MLCP doesn?t provide RE-TRY option. > > > > Thanks and Regards, > > [Email_CBE.gif]Abhishek Jain > > Associate Consultant > > > > From: > > [email protected]<mailto:[email protected]> > > [mailto:general-bounces@<mailto:general-bounces@> > developer.marklogic.com<http://developer.marklogic.com>] On Behalf Of Stuart > Myles > > Sent: Friday, September 23, 2016 8:45 PM > > To: MarkLogic Developer Discussion > > Subject: Re: [MarkLogic Dev General] mlcp Transaction Errors - > SVC-EXTIME and XDMP-NOTXN #CGO# > > > > Thanks! This helped me prevent the errors from occurring and - as a > bonus - significantly sped up my ingestion. > > > > I couldn't use exactly the mlcp command line you suggested, since - in > the version of mlcp I'm using - -input_file_type xml isn't allowed, I had > to use -input_file_type documents instead. Also, my input files don't need > to be split. However, bumping up the threads used (to 30 in my case) made > the transaction / timeout complaints go away. And now I'm ingesting 100,000 > documents in 12 minutes, rather than one hour. Much better! > > > > Regards, > > > > Stuart > > > > > > > > On Fri, Sep 23, 2016 at 3:34 AM, Jain, Abhishek < > [email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>> > wrote: > > Hi Stuart, > > > > MLCP comes with various options, and can be used in various > combinations depending on the file size, memory available and > > Other number of nodes, forest etc. > > > > If you want to try a quick solution you can try this mlcp command : > > mlcp import -host yourhost -port 8000 -username userName -password > PASSWORD -input_file_type xml -input_file_path TempData -thread_count > -thread_count_per_split 3 -batch_size 200 -transaction_size 20 > -max_split_size 33554432 -split_input true > > change username, input file type etc accordingly. > > It?s always good to use splits and threads when working with huge > dataset. > > Some performance matrix you can consider while using above mlcp : > > > > 1. In app server settings you can check if connection time out is > set to 0. > > > > 2. Default spilt size is 32MB, if you can change -max_split_size > 33554432 ( it take in bytes, if your file is bigger ) > > > > 3. Make sure split and thread ratio remains 1:2 or 1:3 for example > > If your document size is 10 MB, and your split size is 1000,000 (1 MB) > then 10/1 = 10 splits > > Then you should create 20 or 30 thread for best CPU utilization. > > > > 4. The above mlcp does well with 150 Million rows, should work for > you as well. > > > > 5. I assume you have a nice good RAM > 4GB alteast. > > > > Thanks and Regards, > > [Email_CBE.gif]Abhishek Jain > > Associate Consultant > > Capgemini India | Hyderabad > > > > From: > > [email protected]<mailto:[email protected]><mailto:general-<mailto:general-> > [email protected]<mailto:[email protected]>> > [mailto:general-bounces@<mailto:general-bounces@> > developer.marklogic.com<http://developer.marklogic.com><mailto:[email protected]<mailto:[email protected]>>] > On Behalf Of Stuart Myles > > Sent: Thursday, September 22, 2016 11:52 PM > > To: MarkLogic Developer Discussion > > Subject: [MarkLogic Dev General] mlcp Transaction Errors - SVC-EXTIME > and XDMP-NOTXN > > > > When I'm loading directories of slightly fewer than 100,000 XML files > into a large MarkLogic instance, I often get timeout and transaction > errors. If I re-run the same directory of files which got those errors, I > typically don't get any errors. > > > > So, I have a few questions: > > > > * Can I get prevent the errors from happening in the first place - e.g. > by tuning MarkLogic parameters or altering my use of mlcp? > > * If I do get errors, what is the best way to get a report on the files > which failed, so I can retry just those ones? Is the best option for me to > write some code to pick out the errors from the log file? And, if so, am I > guaranteed to get all of the files reported? > > > > Some Details > > > > The command line template is > > > > mlcp.sh import -username {1} -password {2} -host localhost -port {4} > -input_file_path {5} -output_uri_replace \"{6},'{7}'\" > > > > Sometimes, the imports run just fine. However, often I get a large > number of SVC-EXTIME errors followed by a XDMP-NOTXN error. For example: > > > > 16/09/22 17:54:03 ERROR mapreduce.ContentWriter: SVC-EXTIME: Time limit > exceeded > > 16/09/22 17:54:03 WARN mapreduce.ContentWriter: Failed document > 029ccd8ac3323658277ca28fead7a73d.0.xml in file:/mnt/ingestion/ > MarkLogicIngestion/smyles/todo/2014_0005.done/ > 029ccd8ac3323658277ca28fead7a73d.0.xml > > 16/09/22 17:54:03 ERROR mapreduce.ContentWriter: SVC-EXTIME: Time limit > exceeded > > 16/09/22 17:54:03 WARN mapreduce.ContentWriter: Failed document > 02eb4562784255e249c4ec3ed472f9aa.1.xml in file:/mnt/ingestion/ > MarkLogicIngestion/smyles/todo/2014_0005.done/ > 02eb4562784255e249c4ec3ed472f9aa.1.xml > > 16/09/22 17:54:04 INFO contentpump.LocalJobRunner: completed 33% > > 16/09/22 17:54:21 ERROR mapreduce.ContentWriter: XDMP-NOTXN: No > transaction with identifier 9076269665213828952 > > > > So far, I'm just rerunning the entire directory again. Most of the time, > it ingests fine on the second attempt. However, I have thousands of these > directories to process. So, I would prefer to avoid getting the errors in > the first place. Failing that, I would like to capture the errors and just > retry the files which failed. > > > > Any help much appreciated. > > > > Regards, > > > > Stuart > > > > > > > > This message contains information that may be privileged or confidential > and is the property of the Capgemini Group. It is intended only for the > person to whom it is addressed. If you are not the intended recipient, you > are not authorized to read, print, retain, copy, disseminate, distribute, > or use this message or any part thereof. If you receive this message in > error, please notify the sender immediately and delete all copies of this > message. > > > > _______________________________________________ > > General mailing list > > [email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>> > > Manage your subscription at: > > http://developer.marklogic.com/mailman/listinfo/general > > > > -------------- next part -------------- > > An HTML attachment was scrubbed... > > URL: http://developer.marklogic.com/pipermail/general/ > attachments/20160929/e5f311a1/attachment.html > > -------------- next part -------------- > > A non-text attachment was scrubbed... > > Name: image001.gif > > Type: image/gif > > Size: 1616 bytes > > Desc: image001.gif > > Url : http://developer.marklogic.com/pipermail/general/ > attachments/20160929/e5f311a1/attachment.gif > > > > ------------------------------ > > > > _______________________________________________ > > General mailing list > > [email protected]<mailto:[email protected]> > > Manage your subscription at: > > http://developer.marklogic.com/mailman/listinfo/general > > > > > > End of General Digest, Vol 147, Issue 51 > > **************************************** > > > > > > ------------------------------ > > _______________________________________________ > General mailing list > [email protected]<mailto:[email protected]> > Manage your subscription at: > http://developer.marklogic.com/mailman/listinfo/general > > > End of General Digest, Vol 147, Issue 53 > **************************************** > -------------- next part -------------- An HTML attachment was scrubbed... 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