> From: Mike Vella >To: Dave Kuhlman <dkuhl...@rexx.com> >Sent: Monday, January 28, 2013 9:17 PM >
> Dear Dave, > > Thanks for your help, we are using generateDS for the computational > neuroscience projects libNeuroML > (http://libneuroml.readthedocs.org/en/latest/) and Pyramidal > (http://pyramidal.readthedocs.org/en/latest/index.html) > > Your suggestion does almost everything I need . However, I do get an > error, one of the attribute names I am renaming is from > "biophysicalProperties" to "biophysical_attributes". Something > strange is going on because this is causing the generation of the > following error, I also attach the schema - perhaps with your > experience of generateDS you can quickly figure out what the issue > is: Mike - OK. The difficulty is that the complexType Cell is defined with a child and an attribute that have the same name. generateDS.py does handle that situation: it append "_attr" to the attribute name. And, generateDS.py enables you to map a name to a different name. However, *until today*, generateDS.py did not handle both of those cases at the same time. That was a bug. I believe I've fixed it now. My tests show that it works and successfully adds "_attr" to the attribute name "biophysical_attributes" (or whatever we map a name to). While working on this, I believe I found another, related bug. I've fixed that, also. In a separate email, attached is a patched version of generateDS.py containing that fix. Please let me know if this works for you. And, thank you for finding this bug and taking the time to report it. - Dave > > /home/mike/dev/libNeuroML/neuroml/generateDS/v2mike.py in parse(inFileName) > 9444 rootObj.export(sys.stdout, 0, name_=rootTag, > 9445 namespacedef_='', > -> 9446 pretty_print=True) > 9447 return rootObj > 9448 > > /home/mike/dev/libNeuroML/neuroml/generateDS/v2mike.py in export(self, > outfile, level, namespace_, name_, namespacedef_, pretty_print) > 7696 if self.hasContent_(): > 7697 outfile.write('>%s' % (eol_, )) > -> 7698 self.exportChildren(outfile, level + 1, namespace_, > name_, pretty_print=pretty_print) > 7699 showIndent(outfile, level, pretty_print) > 7700 outfile.write('</%s%s>%s' % (namespace_, name_, eol_)) > > /home/mike/dev/libNeuroML/neuroml/generateDS/v2mike.py in > exportChildren(self, outfile, level, namespace_, name_, fromsubclass_, > pretty_print) > 7732 biophysicalProperties_.export(outfile, level, namespace_, >name_='biophysicalProperties', pretty_print=pretty_print) > 7733 for cell_ in self.cells: > -> 7734 cell_.export(outfile, level, namespace_, name_='cell', > pretty_print=pretty_print) > 7735 for abstractCell_ in self.abstract_cell: > 7736 abstractCell_.export(outfile, level, namespace_, >name_='abstractCell', pretty_print=pretty_print) > > /home/mike/dev/libNeuroML/neuroml/generateDS/v2mike.py in export(self, >outfile, level, namespace_, name_, namespacedef_, pretty_print) > 8236 if self.hasContent_(): > 8237 outfile.write('>%s' % (eol_, )) > -> 8238 self.exportChildren(outfile, level + 1, namespace_, > name_, pretty_print=pretty_print) > 8239 showIndent(outfile, level, pretty_print) > 8240 outfile.write('</%s%s>%s' % (namespace_, name_, eol_)) > > /home/mike/dev/libNeuroML/neuroml/generateDS/v2mike.py in > exportChildren(self, outfile, level, namespace_, name_, fromsubclass_, > pretty_print) > 8258 self.morphology.export(outfile, level, namespace_, >name_='morphology', pretty_print=pretty_print) > 8259 if self.biophysical_properties is not None: > -> 8260 self.biophysical_properties.export(outfile, level, > namespace_, name_='biophysicalProperties', pretty_print=pretty_print) > 8261 def hasContent_(self): > 8262 if ( > > > > On 28 January 2013 22:29, Dave Kuhlman <dkuhl...@rexx.com> wrote: > Mike - > > Good to hear from you. > > Take a look at the section entitled "Conflicts with Python keywords" > in the generateDS.py documentation: > > http://www.rexx.com/~dkuhlman/generateDS.html#id16 > > That doc is in your distribution of generateDS.py. > > Does that do what you need? > > Hope this helps. > > - Dave > > > -- > > > Dave Kuhlman > http://www.rexx.com/~dkuhlman > > > >________________________________ > > From: Mike Vella > >To: dkuhl...@rexx.com > >Sent: Monday, January 28, 2013 10:36 AM > >Subject: generateDS class renaming > > > > > >Dear Dave, > > > > > >I'm using generateDS for a project and would like to rename classes >produced by generateDS to make the naming more Pythonic. > > > > > >For instance, If I have an element with the xml tag <coffeeCup_3> I would >like to use generateDS to 1. generate classes named CoffeCup3 2. load >documents using <coffeeCup_3> into the corresponding (renamed) class and >2.when writing back to xml use the tag <coffeeCup_3>. > > > > > >The xml schema I'm working with has a strict naming convention so I can >easily use regexp's to switch between the naming conventions - what I'm unsure >of is how I can utilise GenerateDS to do what I require. > > > > > >All the best, > >Mike > > > > > > 1 Attached file > | 51KB > NeuroML_v2alpha.xsd > Download -- Dave Kuhlman http://www.rexx.com/~dkuhlman ------------------------------------------------------------------------------ Everyone hates slow websites. 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