Hello, The files in downloads are uncompressed - wiggle format, fixed, step = 1. This can be determined by the file header line: fixedStep chrom=chr1_random start=97 step=1 0.000 0.001 0.001 0.001 0.000
The files in the browser are compressed. Wiggle files, including compression, is described here: http://genome.ucsc.edu/goldenPath/help/wiggle.html Thank you, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Alex Reynolds" <[email protected]> wrote: > From: "Alex Reynolds" <[email protected]> > To: [email protected] > Sent: Thursday, August 20, 2009 3:52:08 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] mm8 phastCons17Scores vs phastCons17way > > I am looking for uncompressed version of scores in the > "phastCons17way" table for mm8. > > Through looking at the Genome mailing list archives, I read of mention > > of the "phastCons17Scores" data files as being uncompressed > conservation scores. > > Is there a description given for the source of score data here: > > http://hgdownload.cse.ucsc.edu/goldenPath/mm8/phastCons17Scores/ > > and its relationship to scores in the "phastCons17way" table? > > When I intersect a set of coordinates with "phastCons17Scores", I do > > not get the same per-base scores as I get when intersecting with the > > "phastCons17way" table. > > Are there uncompressed "phastCons17way" scores available from another > > source? > > Thank you for any advice, > > Regards, > Alex > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
