I have a collection of ESTs that contain a short target sequence I am interested in.
Most of them can be matched to chromosome coordinates that have a matching genome sequence, but several do not, indicating that they are either mis-sequenced or may be spliced within the target sequence. Is there a way to query (preferably in batch mode) for the chromosome coordinates of a sequence within an EST? For example, if an EST has a length of 1000 and I know my target sequence is at position 408-468 within the EST, but because of introns, the length of the EST on the chromosome is much longer than 1000. Is there a way to structure a query with the EST accession numbers and target positions and get chromosome coordinates for the targets only? Thanks Jim _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
