Hello, Iif you have the coding (no URT, not intron) mRNA, then use the protein translation tool. Home page -> Utilities -> http://www.soe.ucsc.edu/~kent/dnaDust/dnadust.html
mRrna sequence for custom tracks can be directly obtained from the Table browser. Set the primary track as the custom track and output as sequence. Thanks, Jennifer Jackson ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Chris Oldmeadow" <[email protected]> wrote: > From: "Chris Oldmeadow" <[email protected]> > To: [email protected] > Sent: Sunday, August 30, 2009 8:30:29 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] protein sequence from custom file > > Hi, > > Is it possible to extract protein sequence from just the positions > from a custom track? I know it is possible to obtain the protein > sequence using the group "gene and gene prediction". When I try to > create an intersection with my custom track (which are coordinates > within exons) I can only obtain the protein sequence for the whole > genes that intersect with my positions. What Id like are just the > protein sequences corresponding to the positions only. Is this > possible using the table browser? if not is there another tool which > can do this? > > Best, > Chris > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
