Hi, I'm not sure if I have a suggestion to add a feature to the browser, or if I'm asking about a feature that already exists but I can't find it.
I have a bunch of sequences I'm BLATting, some of which match the forward strand and some match reverse (with respect to the assembly) . None have introns or any other interruption to the match. I can see the strand on the BLAT summary page but not when I go to the browser - it'd be really useful to show it there too. If there's an intron or other interruption to the match I can see strand displayed by arrows in the intron, but without for perfect matches I don't see the strand displayed. The example below will help show what I mean when BLATted to the mouse assembly (any version) - they're from opposite strands, but you can't see that when you go to the browser display. thanks for any suggestions, Janet Young ------------------------------------------------------------------- Dr. Janet Young (Trask lab) Fred Hutchinson Cancer Research Center 1100 Fairview Avenue N., C3-168, P.O. Box 19024, Seattle, WA 98109-1024, USA. tel: (206) 667 1471 fax: (206) 667 6524 email: jayoung ...at... fhcrc.org http://www.fhcrc.org/labs/trask/ ------------------------------------------------------------------- >test1 AAGGTTTTTAGTTCTGTCTACAATCACAGGTACCTTTTTTCATACAGGTTGTGGTCTTAGAATGTACTTGGC AGAAGTTGGAGCTGCCTTACAAGGCCATTTCAAGATCCATGGTGAATTTTACCTGTAAGAGAAGAAAAATATTCTCATGGCTTTATACTGAAGAATGTACATGTGGACTAATGATCCTACGACAGGCATAAAAGAAATGCCTGGTGCAGAATAAGAGAGCAGACAATGATAATTATATATACAACAATATATTACCTCATATGCTCTGAAGCCTCTTATTTTTTAAATACTTGTAGAAATGATGAAGCCTACATCAAACCCTTAAGACAGTGAGAGGAAGACAGAGTATTTGGGTGAATTGAGTCAAATATTTAATGCACTTATCTTATTGCATGCAATACAATGTGGATGCTTAGGTGCCTCAGAAAGTCTTCCTATGGTGTTATATTGAGGTGTAGGAAGGTAGAGGCTCAAGATACCTAAAAAAGAGTATATCTTATGCACATAATTTTAGCATCATTTTAATGTTTCTTTAGAAAAATGAACAATAGTTTGAAGTAATATTTTCATTATTTACTATTTTATCTTTGATTTTGAACATGGTTTTTCAATTTGATTTAAAATTAGATTGGAAAGTCCTCTTACATCAACCATACTAGCTATCATCAATTAACAAAATAAGTTATTTTTGGATGTCCTATATTCTTCTGGAAAACCAAAACCATATCACTGGCTTTCAGTAAACAATGAAGAATTCCAAAGTACACCATAGCTTGTAGATGCTCCTTAGGGAGGGTCAGCCAGGCCTTAATGAGTAACTTTGTTCCAGTTATTATTTCTGCATAAAAAAAGCCAAAGAACCTGTCTCTCAAAGGGGCAGGCAGCAATAGCCCCAAGGGTTTGTTATGCTTACCCAGAGCCCCTTTCTCTCTCTTTATGCTCAAAGATATTGACCTTCATTCCTGCTGCATGTGCATCTTTGGCAGAG >test2 TCTGCCAAAGATGCACATGCAGCAGGAATGAAGGTCAATATCTTTGAGCATAAAGAGAGAGAAAGGGGCTCT GGGTAAGCATAACAAACCCTTGGGGCTATTGCTGCCTGCCCCTTTGAGAGACAGGTTCTTTGGCTTTTTTTATGCAGAAATAATAACTGGAACAAAGTTACTCATTAAGGCCTGGCTGACCCTCCCTAAGGAGCATCTACAAGCTATGGTGTACTTTGGAATTCTTCATTGTTTACTGAAAGCCAGTGATATGGTTTTGGTTTTCCAGAAGAATATAGGACATCCAAAAATAACTTATTTTGTTAATTGATGATAGCTAGTATGGTTGATGTAAGAGGACTTTCCAATCTAATTTTAAATCAAATTGAAAAACCATGTTCAAAATCAAAGATAAAATAGTAAATAATGAAAATATTACTTCAAACTATTGTTCATTTTTCTAAAGAAACATTAAAATGATGCTAAAATTATGTGCATAAGATATACTCTTTTTTAGGTATCTTGAGCCTCTACCTTCCTACACCTCAATATAACACCATAGGAAGACTTTCTGAGGCACCTAAGCATCCACATTGTATTGCATGCAATAAGATAAGTGCATTAAATATTTGACTCAATTCACCCAAATACTCTGTCTTCCTCTCACTGTCTTAAGGGTTTGATGTAGGCTTCATCATTTCTACAAGTATTTAAAAAATAAGAGGCTTCAGAGCATATGAGGTAATATATTGTTGTATATATAATTATCATTGTCTGCTCTCTTATTCTGCACCAGGCATTTCTTTTATGCCTGTCGTAGGATCATTAGTCCACATGTACATTCTTCAGTATAAAGCCATGAGAATATTTTTCTTCTCTTACAGGTAAAATTCACCATGGATCTTGAAATGGCCTTGTAAGGCAGCTCCAACTTCTGCCAAGTACATTCTAAGACCACAACCTGTATGAAAAAAGGTACCTGTGATTGTAGACAGAACTAAAAACCTTA _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
