Hi,
 
I was wondering if it possible to retrieve the coordinates masked out in
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/chromFaMasked.tar
.gz as BED file.
 
I've had a look at Tables > Variation and Repeats : RepeatMasker : rmsk
and output format BED - however, this seems to include regions that
aren't masked out in chromFaMasked.
 
Do I have to pick another track or is there another way to retrieve this
information.
 
Thanks for any help,
Deniz
 
Deniz Koellhofer
Australian Genome Research Facility Ltd - 
Bioinformatics
Level 5 Gehrmann Laboratories 
Research Road 
University of Queensland 
St Lucia QLD 4072 

(   +61 7 3346 7328 
7   +61 7 3365 1823 
: [email protected]*  
8 www.agrf.org.au 
 

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