Hello Qu, When using the Assembly browser, species may be added or subtracted on the track control page. Have you experimented with this feature yet? It may provide the data you need without recomputing anything. Try this and provide feedback or to clarify if I has misinterretted your question. Thank you, Jennifer
------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Qu Zhang" <[email protected]> wrote: > From: "Qu Zhang" <[email protected]> > To: [email protected] > Sent: Thursday, September 3, 2009 1:33:52 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] Question about multiple alignments of several genomes > > Hi there, > > I'd like to get a human-chimp-mouse genome alignment, but from the > UCSC > database, I didn't find appropriate multiple alignment for my need > (multiple > alignments here seem to contain a lot of species). So I am trying to > align > these genomes locally using multi-Z tool. My question is: should I put > all > the chromosomes from a species in a single file and run the multi-z > program? > It seems to take forever to finish this, is there any quick way to do > this? > On the UCSC database, the multiple alignment data are chromosome by > chromosome, what should I do if I want a result like that? Your help > will be > appreciated! > > Best, > Qu > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
