Hello I have to use Entrez Gene IDs in order to get the exon coordinates for many genes. I want to use the gene ID rather than the name to get to the ucs genes and then the exon coordinates
I looked at the link below and tried the Table browser. However at Track there's no Known Genes option; if I chose refSeq genes then at table there's no knowntolocuslink option Please let me know Thanks a lot Valeria Vasta -----Original Message----- From: Katrina Learned [mailto:[email protected]] Sent: Thursday, July 09, 2009 1:07 PM To: Vasta, Valeria Subject: Re: [Genome] search genes with GeneID Hi Valeria, I am sorry that I misunderstood your question. Yes, this is possible. Please see this previous mailing list answer for directions on exactly how to do this with our Table Browser (click on "Tables" in the blue menu bar at the top of the page): https://lists.soe.ucsc.edu/pipermail/genome/2006-November/012212.html In the future, please direct your questions to the genome mailing list at [email protected]. You will likely get a quicker response to your question. Katrina Learned UCSC Genome Bioinformatics Group Vasta, Valeria wrote: > The thing is that I need to search a long list of genes, so far I could > do it only with the name TABLE-KNOWN GENE_PASTE LIST > Any way to do it with the #? > > Valeria > > -----Original Message----- > From: Katrina Learned [mailto:[email protected]] > Sent: Wednesday, July 08, 2009 8:00 AM > To: Vasta, Valeria > Cc: [email protected] > Subject: Re: [Genome] search genes with GeneID > > Dear Valeria, > > You can search for genes using the geneID# from NCBI gene page (Entrez > Gene). To do so, type the gene ID in the "position/search" field of the > Genome Browser. > > Please don't hesitate to contact the mail list if you require further > assistance. > > Katrina Learned > UCSC Genome Bioinformatics Group > > > > Vasta, Valeria wrote: > >> Hello >> >> >> >> Is it possible to search genes using geneID# from NCBI Gene page >> instead of gene names? I noticed that gene names can pull out genes >> > that > >> are not related but have the same name by chance >> >> thanks >> >> >> >> Valeria >> >> >> >> Children's Hospital and Regional Medical Center is now Seattle >> > Children's. > >> CONFIDENTIALITY NOTICE: This e-mail message, including any >> > attachments, is for the sole use of the intended recipient(s) and may > contain confidential and privileged information protected by law. Any > unauthorized review, use, disclosure or distribution is prohibited. If > you are not the intended recipient, please contact the sender by reply > e-mail and destroy all copies of the original message. > >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >> > > Children's Hospital and Regional Medical Center is now Seattle Children's. > CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information protected by law. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message. > > CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information protected by law. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
