Hello,
  I've come across a segfault that occurs in v 34 but not in v 33
and have narrowed it down to one mrna and an 800kb reference with
-maxIntron=30000 -oneOff=1 -mask=lower 

options, setting maxIntron over 74000 prevents the segfault from
occurring.  removing any of the options also prevents the segfault.

If you'd like I can send the sequences that provoke the segfault,
they compress to 270kb

Joel
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