Hello Jittima, We recommend going to the track description page to get some of the details (including links out to sources or to the tables/files in the database associated with the track). To view this page, click on the track's name in the Assembly browser.
To understand the IDs and formatting, starting on the TFBS Conserved track description page, click on "View table schema" to go to the Table browser. There are two tables associated with the track. The second table has a field called "factor" that is just what you state, the transcription factor name. The other part of the ID represents a specific binding site. primary: tfbsConsSites associated: tfbsConsFactors A description of how individual binding sites relate to specific factors is also on the track description page, towards the end of the section "Methods" right before "Table Format". For more information about the source data, follow the link under "Sources" on the track description page to Biobase. Some help for obtaining data, either by flat file or through the Table browser: http://genome.ucsc.edu/FAQ/FAQdownloads#download1 http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#Download http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TableBrowser Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Jittima Piriyapongsa" <[email protected]> wrote: > From: "Jittima Piriyapongsa" <[email protected]> > To: [email protected] > Sent: Thursday, September 17, 2009 8:49:29 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] TFBS conserved > > Hi, > > I have a question regarding "TFBS conserved" track in Table browser. > What is the meaning of the TFBS name? For example, > V$CREBP1_01 > V$CREBP1_Q2 > > Are they the binding sites that bind to the same transcription factors > (because the same name "CREBP1")? and what is the meaning of 01 and Q2 > at the end? If I want to categorize TFBS by its associated > transcription factor, can I just consider TFBS (ex. V$xxxx_yy) with > the same name i.e. same xxxx to be the same type? > > Thank you. > > Jittima > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
