Hello Gert, I will forward your data to our coordinator and they will contact you offline, Jennifer
------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "G Veenstra" <[email protected]> wrote: > From: "G Veenstra" <[email protected]> > To: [email protected] > Sent: Monday, September 21, 2009 9:00:34 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] tracks for Xenopus tropicalis > > To whom it may concern, > > We recently published the first vertebrate embryo chromatin state and > transcriptome maps, which we would like submit (if possible as > standard tracks) for the Xenopus tropicalis genome. It concerns > ChIP-seq profiles of H3K4me3, H3K27me3 and RNA Polymerase II, in > addition to deep sequencing of cDNA (RNA-seq). We also have made a > collection of experimentally validated, improved gene models. > > The paper was published in Developmental Cell: > Robert C. Akkers*, Simon J. van Heeringen*, Ulrike G. Jacobi*, Eva M. > Janssen-Megens, Kees-Jan Françoijs, Hendrik G. Stunnenberg and Gert > Jan C. Veenstra. 2009. A hierarchy of H3K4me3 and H3K27me3 acquisition > in spatial gene regulation in Xenopus embryos > <http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=19758566&itool=pubmed_DocSum> > . Developmental Cell, 17: 425-434. > > The tracks for upload in the UCSC browser are available at our web > site: > http://www.ncmls.nl/gertjanveenstra/genomedata.asp > <http://www.ncmls.nl/gertjanveenstra/genomedata.asp> > > I know that these data have generated great interest in the Xenopus > community. Could you make these data available as a standard track for > xenTro2 ? > Many thanks. > > Best regards, > Gert Veenstra > __________________________________ > Gert Jan C. Veenstra, PhD > Dept. Molecular Biology, Faculty of Science, > Nijmegen Centre for Molecular Life Sciences, > Radboud University Nijmegen, The Netherlands. > Mail: NCMLS M850/3.79, PO Box 9101, 6500 HB Nijmegen, The > Netherlands. > Phone +31-24-3610541, Fax +31-24-3610520, Email > [email protected], > Web http://www.ncmls.nl/gertjanveenstra > > > > The Radboud University Nijmegen Medical Centre is listed in the > Commercial Register of the Chamber of Commerce under file number > 41055629. > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
