Hi All -
As of Tuesday, I am suddenly encountering an issue with my bigBed tracks.
The track info uploads fine, but when I try to go to the browser I get the
following error:
Couldn't set connection database to hg19
MySQL server has gone away
I'm getting this from tracks I know are fine (e.g. they were working
Monday). I also made a new track with the example data.
My apache access log shows the genome browser is trying to access the file:
205.142.199.52 - - [24/Sep/2009:10:22:52 -0400] "GET
/cchmctracks/myBigBed.bb HTTP/1.1" 206 8192 "-" "genome.ucsc.edu/net.c"
205.142.199.53 - - [24/Sep/2009:10:26:40 -0400] "HEAD
/cchmctracks/myBigBed.bb HTTP/1.1" 200 - "-" "genome.ucsc.edu/net.c"
205.142.199.53 - - [24/Sep/2009:10:27:27 -0400] "HEAD
/cchmctracks/myBigBed.bb HTTP/1.1" 200 - "-" "genome.ucsc.edu/net.c"
205.142.199.53 - - [24/Sep/2009:10:28:53 -0400] "HEAD
/cchmctracks/myBigBed.bb HTTP/1.1" 200 - "-" "genome.ucsc.edu/net.c"
Interestingly, the error message appears before the request appears in the
tail -f listing of the access log.
Has anyone ever seen this before? At this point I suspect the IT people did
something Monday night to increase the latency of the network proxy, but
would love to hear other ideas.
Thanks,
Curt
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