Hello, The data for hg19 is not available. Please use hg18. We do not recommend using liftover for SNP data since it is so dependent on the genomic sequence at the base level. But a test for a limited set of regions might be worth examining to determine if the results are acceptable.
Web liftOver tool - http://genome.ucsc.edu/cgi-bin/hgLiftOver If you want to convert a large set of data, then using the UNIX line command version is recommended. Write back if you are interested and we can provide details and help links to the executables and input files. Thanks, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Stef" <[email protected]> wrote: > From: "Stef" <[email protected]> > To: [email protected] > Sent: Friday, September 25, 2009 2:33:57 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] SNP and hg19 > > hello, > Do you have the alignment between affy SNp 6.0 and hg19 ? > Best > Stef > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
