Hello, The NNN stretches are gaps. Clear all tracks except for Map Contigs, GAP and Repeat Masker to view this. Thanks, Jennifer
------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Atteeq Rehman (NIH/NIDCD) [F]" <[email protected]> wrote: > From: "Atteeq Rehman (NIH/NIDCD) [F]" <[email protected]> > To: [email protected] > Sent: Wednesday, September 30, 2009 2:33:46 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] Repeat Masker discripancy > > Hey, > I am looking at human hg18 assembly(March2006) and on coordinates > chr9:138,306,700-138,336,860 . I opened the track "Repeat Masker" in > full mode but it does not display any kind of repeats in the browser. > But when I get DNA of this region and check the box for mask repeats > with "N", the output is that every base of this region is masked up by > "N". can you please explain this problem. Thanks a lot. > > > Atteeq Ur Rehman > Visiting Fellow > National Institute on Deafness and Other Communication Disorders, > National Institutes of Health, > Room 2A-19, 5 Research court, Rockville, MD, USA, 20850. > Lab Ph. No. 301-402-9059 > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
