Hi there, I am very interested in representing the Mouse Embryonic Kidney Subcompartment Microarray Atlas (Affymetrix M430.2, over 50 .CEL files) published in Dev. Cell in 2008 by Eric Brunskill et. al as a microarray track (i.e. GNF Atlas /Affy Exon track), but don't know where to start.
I have referred to the Microarray track Wiki page but still not sure about several key aspects: 1) do I have to physically load the .CEL files in microarrayGroups.ra? 2) What numbers are represented in the expScores? Can I use any numbers here (i.e. Fold Change) for the representation of the heatmap scale? 3) Am I required to provide the Mean and Median? 4) how do I get access to microarrayGroups.ra (kent/src/hg/makeDb/hgCgiData)? Do I need to a UCSC mirror adminstrator? Thanking you in advance for you advice, patience and feedback. Cheers, Rathi _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
