Hello Steve, No, we don't offer a multiple alignment program. We do support the display of multiple alignment custom tracks in the MAF format, and sometime next year, we'll have support for custom BAM tracks.
Here are a few multiple aligners you may want to look into. We use multiz from the Miller lab to build our comparative genomic multiple alignments. http://www.bx.psu.edu/miller_lab/ We're also collaborators with the developer of Muscle, Bob Edgar. http://www.drive5.com/muscle/ And finally, our very own Benedict Paten is the primary force behind Pecan. http://www.ebi.ac.uk/~bjp/pecan/ <http://www.ebi.ac.uk/%7Ebjp/pecan/> Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu Steve Oh wrote: > Hello, > > I am looking to align multiple sequences simultaneously. Does > the UCSC genome browser have that capability? I wasn't sure if it > did. Do you know of any good programs to help me with this other than > clustalX? > > Thank you, > Steve Oh > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
