Hello Jon, For the genome "Human Mar. 2006 (hg18) assembly", under the track group Mapping and Sequencing Tracks, there is a track called Fosmid End Pairs. The track can be brought up in the Table browser and extracted as sequence.
Creating this dataset for the newest release (hg19) is under consideration, but it would likely not be created very soon. A liftOver might be possible on your own, if you have some unix resource. Here is the Table browser help, with a focus link to extracting sequence: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html#Sequence Please let us know if you are interested in trying liftOver and I can send you instructions for that process (executables, data sources, parameter suggestions). Thank you, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Jonathan W Jarvik" <[email protected]> wrote: > From: "Jonathan W Jarvik" <[email protected]> > To: [email protected] > Sent: Friday, October 9, 2009 11:08:07 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] Human fosmid files > > I am interested in obtaining a file or files with end-sequence data > for > the set of human fosmids. What person can I speak to about this? > > Thank you. > > -Jon Jarvik > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
