Hi, I have locally installed UCSC Genome Browser with main focus on mm8 assembly. It is working fine and I can get all the sequences from 'Tables' browser (based on KnownGene table gene's txStart and txEnd position information). But I would like to extract these sequences programmatically (I am using Java and 'mm8 database of Genome Browser' in my application development) for a given knownGene entry (sequence between txStart and txEnd). How can I query the mm8.2bit file to get those sequences for a given gene of knowGene table.
Thanks, Ashok Ashok Reddy Dinasarapu Ph.D University of California,San Diego Department of Bioengineering 9500 Gilman Drive, m/c 0412 La Jolla, CA 92093-0412 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
