Hello, For the hg19, since there is not UCSC Genes track published yet, the normal route is not possible on the main public server yet.
ccdsGene -> ccdsKgMap -> kgAlias/kgXref or knownTo* The options are to use hg18 or to use the test server's hg19 http://genome-test.cse.ucsc.edu/. The UCSC Genes track is under development and is close to being finished, but could change before the final release. Also, the table ccdsKgMap is not linked in the Table browser, so bring the table up by using "All Tables" and downloading. Then using flat files and the schema information, link the data using your own tools. We hope this helps, Jennifer Jackson ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "patrik" <[email protected]> wrote: > From: "patrik" <[email protected]> > To: [email protected] > Sent: Monday, October 26, 2009 8:51:36 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] A question > > Hello > I would like to know how I could use geneName or geneId to find out > entries in the ccdsGene table using assembly Feb 2009. Do I have to > use > coordinate from the refGene table or is it possible to link a geneName > > or geneId to a ccdsId? > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
