Hi, I was wondering how UTR regions(3' or 5') are defined for non coding regions on browser. For an example: Refseq gene FAM138F (NR_026820.1) and UCSC gene uc001aak.1 are both non coding and have exactly same sequence and located in the same region o the browser. Also both are on negative strand. When I tried to download the genomic sequence(excluding intron region) for both the genes separately, I get only 3'UTR sequence for NR_026820.1 where as the same sequence is defined as 5'UTR for uc001aak.1.
I am wondering about the UCSC browser conventions for defining these UTR regions. I tried to look at the help page on: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#FineTuning but couldn't find enough information from there. Thanks. -- -------- Vinay Kumar Mittal MS,Bioinformatics Georgia Institute of Technology _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
