Hello, Your ideas are good ones but they are not a part of the current functionality. I will pass on your suggestion to the development team.
Thanks for the feedback! Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Jie Huang (NIH/NHLBI) [F]" <[email protected]> wrote: > From: "Jie Huang (NIH/NHLBI) [F]" <[email protected]> > To: "Jennifer Jackson" <[email protected]> > Cc: [email protected] > Sent: Monday, November 9, 2009 11:40:47 AM GMT -08:00 US/Canada Pacific > Subject: two customized graph into one ? > > Hi, Jennifer: > > I am still trying to figure a little bit more out of the customized > track features. > > From UCSC genome browser, I can add customized track for a certain > region like this one > http://genome.ucsc.edu/cgi-bin/hgTracks?org=human&position=chr12:110368000-110980000&hgt.customText=http://people.bu.edu/jiehuang/SH2B3.txt, > where I can display SNP position together with annotation text. > > Then from Genome Graphs, I can upload genome-wide data and get > customized graph like the one attached. > > However, this makes me have to create two different types of graphs > with two different input data format. Can I instead make them into > one? That is, I load annotation text into the genome-wide GENOME > GRAPHS, then when I zoom into certain region that genome-wide graph, I > will see regional graphs with the annotation text like the one I > generated above. > > Also, in the GENOME GRAPHS graph, the height of each dot is from the > P-value or any numerical variable. Can I make the SNP in the regional > graph to show the same kind of Y-axis? > > So, in a word, I am trying to figure out if there is a way to build > one graph that has features of both... > > Best regards, > Jie > > -----Original Message----- > From: Jennifer Jackson [mailto:[email protected]] > Sent: Thursday, November 05, 2009 3:32 AM > To: Huang, Jie (NIH/NHLBI) [F] > Cc: [email protected] > Subject: Re: [Genome] customized display for certain SNPs in Genome > Graphs? > > Hello, > > These specific features are not a part of the current functionality, > but I will pass on your comments to our scientific development team. > > Thank you for the suggestions, > Jennifer > > ------------------------------------------------ > Jennifer Jackson > UCSC Genome Bioinformatics Group > > ----- "Jie Huang (NIH/NHLBI) [F]" <[email protected]> wrote: > > > From: "Jie Huang (NIH/NHLBI) [F]" <[email protected]> > > To: [email protected] > > Sent: Wednesday, November 4, 2009 12:14:46 PM GMT -08:00 US/Canada > Pacific > > Subject: [Genome] customized display for certain SNPs in Genome > Graphs? > > > > Hi, it seems that right now I can import a text file with SNP id and > P > > values into Genome Graphs, and I can specify a distance threshold > to > > draw connecting lines. My question is: > > > > > > 1. Can I specify different color for different markers based > on > > according definition in the input file? > > > > 2. Can I specify connecting lines for specific SNP pairs > based > > on according definition in the input file? > > > > 3. Can I show text for the markers besides its color and > > position, maybe when mouse over a marker? > > > > Thank you very much! > > > > Jie > > _______________________________________________ > > Genome maillist - [email protected] > > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
