Hello Hiram, Thank you for that information. I've been trying to compile the hgTrackDb and hgFindSpec binaries but I keep running into an error. I am trying to find some solution for the issue but I was wondering if there were any precompiled versions that you had that we could download. Is that a possibility?
Thanks Abhishek Abhishek Goel Staff Research Associate Geschwind Laboratory, UCLA Neurology Gonda Neuroscience and Genetics Research Center #2309 University of California Los Angeles 695 Charles E. Young Dr. South Los Angeles, CA 90095 Tel: (310) 794-7537 Fax: (310) 267-2401 On Tue, Oct 27, 2009 at 8:35 AM, Hiram Clawson <[email protected]> wrote: > Good Morning Abhishek: > > You should take these tracks and make them permanent tracks > in your browser if you would like them to be available to > everyone. See these starting notes about how to load tracks > into the browser: > http://genome-test.cse.ucsc.edu/~kent/src/unzipped/product/README.trackDb<http://genome-test.cse.ucsc.edu/%7Ekent/src/unzipped/product/README.trackDb> > > Follow the additional references to other README files from there. > > --Hiram > > > Abhishek Goel wrote: > >> Hello Jennifer, >> >> Thank you for that info. Do you have any suggestions on where to start. I >> was going to see if there was any table with the list of hgsids but it >> turns >> out those are just temp ids and not really useful. >> >> Each time a BED file is loaded into the browser to create a custom track a >> new table is added to the customTrash database. The table itself is just >> the >> mysql version of the BED file. >> >> Thanks. >> >> Abhishek >> >> >> Abhishek Goel >> Staff Research Associate >> Geschwind Laboratory, UCLA Neurology >> Gonda Neuroscience and Genetics Research Center #2309 >> University of California Los Angeles >> 695 Charles E. Young Dr. South >> Los Angeles, CA 90095 >> Tel: (310) 794-7537 >> Fax: (310) 267-2401 >> >> >> >> >> >> On Thu, Oct 22, 2009 at 5:42 PM, Jennifer Jackson <[email protected]> >> wrote: >> >> Hello, >>> >>> No, there is no automatically generated page. The idea of making one from >>> the custom track table is a good one. >>> >>> The only alternative would be to get wiki and Sessions set up, but that >>> is >>> a major project, and not worth it for just a web page view. >>> >>> Hope this helps, >>> Jennifer >>> >>> >>> ------------------------------------------------ >>> Jennifer Jackson >>> UCSC Genome Bioinformatics Group >>> >>> ----- "Abhishek Goel" <[email protected]> wrote: >>> >>> From: "Abhishek Goel" <[email protected]> >>>> To: [email protected] >>>> Sent: Thursday, October 22, 2009 12:29:28 PM GMT -08:00 US/Canada >>>> Pacific >>>> Subject: [Genome] Saved custom tracks >>>> >>>> Hello, >>>> >>>> I've just set up a Genome Browser mirror for our lab and our >>>> collaborators. >>>> I enabled the customTrash database and set up the hg.conf file so that >>>> the >>>> added customTracks are saved. However, is there a page that lists all >>>> the >>>> custom tracks that have been saved? >>>> >>>> I could just create a page that would list all the saved custom tracks >>>> from >>>> the mysql database but I thought if there is already a page I could >>>> just use >>>> that. >>>> >>>> Thanks. >>>> >>>> Abhishek >>>> >>>> Abhishek Goel >>>> Staff Research Associate >>>> Geschwind Laboratory, UCLA Neurology >>>> Gonda Neuroscience and Genetics Research Center #2309 >>>> University of California Los Angeles >>>> 695 Charles E. Young Dr. South >>>> Los Angeles, CA 90095 >>>> Tel: (310) 794-7537 >>>> Fax: (310) 267-2401 >>>> _______________________________________________ >>>> Genome maillist - [email protected] >>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>>> >>> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >> _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
