Hello, We double checked and you are subscribed to the genome mailing list, but not the genome-mirror mailing list. To subscribe, follow this link and scroll down to "Mirroring" http://genome.ucsc.edu/contacts.html
http://genome.ucsc.edu/admin/cvs.html I will check to see if we can get you a version of v213 placed where you can ftp it. If you do not hear back in a few days, feel free to write back for an update. Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "WANG Wuqi" <[email protected]> wrote: > From: "WANG Wuqi" <[email protected]> > To: "Jennifer Jackson" <[email protected]> > Cc: [email protected], "Hiram Clawson" <[email protected]>, "WANG Wuqi" > <[email protected]> > Sent: Tuesday, November 24, 2009 7:02:24 PM GMT -08:00 US/Canada Pacific > Subject: RE: [Genome] Track name prefix "$o" > > Hi Jennifer, > > Thank you for support. > > If our option is to roll back to v213, where is to download it? > because our last upgrading is from v209 to v218 directly, have not > v213. > > I already subscribed to the genome-mirror mailing list since 2 Jun > 2009, > everyday I receive email about various issue message, seem never > receive > Genome browser and MySQL upgrade info. > > Please check if my subscribe is correct. > > Thanks & Regards > > Wuqi > > -----Original Message----- > From: Jennifer Jackson [mailto:[email protected]] > Sent: Tuesday, November 24, 2009 6:33 PM > To: WANG Wuqi > Cc: [email protected]; Hiram Clawson > Subject: Re: [Genome] Track name prefix $o > > > Hello, > > You are correct, the variable for organism in the labels are not being > interpreted correctly during the make process. > > The browser source code has been updated to mySQL version 5 since the > code base release v214. Many adjustments were made to utilities to > support the change. Genomic assemblies were updated incrementally, but > all are converted now. The programs in the source code that were > altered are listed in a posting to the genome-mirror mailing list at > each release. > > https://lists.soe.ucsc.edu/pipermail/genome-mirror/ > https://lists.soe.ucsc.edu/pipermail/genome-mirror/2009-September/001412.html > https://lists.soe.ucsc.edu/pipermail/genome-mirror/2009-September/001413.html > > You have two options: either roll back to v213 or update to mySQL > version 5. > > Using a mixed set (make Alpha from v213 and other utilities from v214 > or later) is possible, but not recommended. It is difficult to predict > what other issues would pop up. But you can always try it out and see > what happens. > > You may be interested in subscribing to the genome-mirror mailing > list. It is fairly low-volume. A digest version would help you to know > when a source code update has been released and what changed. > Occasionally major data changes are also posted, very useful if you > perform regular updates, as some of these involve warning about the > release of very large or altered datasets. > > We hope this helps, > Jennifer > > ------------------------------------------------ > Jennifer Jackson > UCSC Genome Bioinformatics Group > > ----- "WANG Wuqi" <[email protected]> wrote: > > > From: "WANG Wuqi" <[email protected]> > > To: "Hiram Clawson" <[email protected]> > > Cc: "WANG Wuqi" <[email protected]>, [email protected] > > Sent: Tuesday, November 24, 2009 2:11:20 AM GMT -08:00 US/Canada > > Pacific > > Subject: [Genome] Track name prefix $o > > > > Hi Hiram, > > > > Our genome browser mirror site version is v219, MySQL is version > 4.0. > > > > We find a number of track name prefix "$o" in group " Comparative > > Genomics" of hg18(Please see attachment). Also we do not find > > corresponding entry in file trackDb.ra, so I update the > 'shortLabel' > > and 'longLabel' in the table hg18.trackDb depending on latest table > > hg18.trackDb Information, the track names are changed too in gonome > > browser and do not appear track name with prefix "$o", but when I > do > > "make alpha DBS=hg18", the track names come repristination. > > > > Please give advice > > > > Thanks & regards > > > > Wuqi > > > > > > _______________________________________________ > > Genome maillist - [email protected] > > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
