Hi Hiram, I want the annotation files to sit locally in the user's computer, and prefer not to put them in a website. I tried to put a formated annotation file named x.bed in my /home/home/Desktop/x, and then to connect to:
http://genome.ucsc.edu/cgi-bin/hgTracks?org=hg19&position=chr22:20100000-20140000&hgt.customText=/home/home/Desktop/x/x.bed But the custom tracks located in x.bed are not shown in the genome browser website. In principle I want everything to run locally (except of calling the genome browser) Avi --- On Sun, 12/13/09, Hiram Clawson <[email protected]> wrote: > From: Hiram Clawson <[email protected]> > Subject: Re: [Genome] Linking custom tracks to the genome browser > automatically > To: "Fungazid" <[email protected]> > Cc: [email protected] > Date: Sunday, December 13, 2009, 7:37 PM > Good Morning Avi: > > Can you create an HTML page of URL links to the browser > that reference your custom tracks ? Please note the > discussion of "Sharing Your Annotation Track with Others" > on this page: > http://genome.ucsc.edu/goldenPath/help/customTrack.html > > Will this method work for your application ? There > should > be no need to bother your users with pasting custom track > data. > > Alternatively, you could arrange your custom tracks into > groups in saved session data and refer your users to > the sessions. > > --Hiram > > Fungazid wrote: > > Hello genome browser people, > > > > I have a very large list of genomic regions sets > (~10,000 sets), their coordinates, and their custom tracks. > In principle, I can copy each custom track text from the > list, place it in the genome browser form, submit it, and > watch it graphically in the browser. This is OK, but is > there some tool or method that allow me to click on custom > track icons and directly go to the browser without needing > to repeat the "copy-paste-submit-clean" procedure again and > again ? If this is possible it can is very very useful for > me because it allow me give my data to other users without > irritating them with the copy-paste procedure > > > > Thanks in advanced Avi > > > > > > > _______________________________________________ > > Genome maillist - [email protected] > > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
