Hi, I'm trying to get the coordinates of CDS exons, UTR exons 200 b downstream and 200 b Upstream for hg12, but this human genome assembly seems not to be present in the menu of UCSC table browser. If I have such genomic elements coordinates for hg16 and I want to use liftover tool for the conversion, I should use *hg16ToHg12.over.chai*n as a map.chain, right? Where can I get this file? It's not present in hg12 archive, where u can only find hg12ToHg16.over.chain. By the way, is there a better alternative to retrieve these data?
Thanks a lot! -- Meritxell Oliva PhD Student Comparative Bioinformatics Group Bioinformatics and Genomics Programme Centre de Regulacio Genomica (CRG) Dr. Aiguader, 88 08003 Barcelona Spain email: [email protected] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
