Hello, The tool Genome Graphs is one option.
This is also possible using Custom tracks and the browser (if you want additional annotation included). The general idea would be to run a BLAT of the sequences, save results as custom tracks, open them in the Assembly browser (hide any tracks you want to) and save as a PDF. This assumes that all align to the same genomic region. To create a MAF of the transcripts themselves, see the Conservation track description page for the types of tools we use to create multiple alignments (multiz, etc.). Going into Galaxy might also be an option. Extract the custom track of your data and send it over using the Table browser, or do there directly, http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#GenomeGraphs http://genome.ucsc.edu/FAQ/FAQcustom http://genome.ucsc.edu/cgi-bin/hgTables?command=start http://g2.bx.psu.edu/ We hope this gives you an option that meets your needs, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Isabella Cambel" <[email protected]> wrote: > From: "Isabella Cambel" <[email protected]> > To: [email protected] > Sent: Thursday, December 17, 2009 2:35:14 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] website or link > > Hi, > > I would like align DNA sequence of a transcript from multiple species > and view the results as a graph. For example, please see the attached > figure. Is there a link or website that I can use to generate the > figure? > > Thank you for your help. > > Isabella > > > > _________________________________________________________________ > Hotmail: Powerful Free email with security by Microsoft. > http://clk.atdmt.com/GBL/go/171222986/direct/01/ > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
