Dear administrator
I am Taek-Kyun, a researcher at POSTECH in Korea. I’m so glad to meet you through this e-mail. I have some difficulty in implementing the BLAT program. Although I’ve seen the option of the program, I cannot understand it, the biggest problem is the word used in the option. I’m trying to align the database with the very short sequence (the sequence size : 20 bp). And I want to allow the gap option of more than 2bp. In these case, how should I install the option to get a desired result? Additionally, I want to know exactly the word’s meaning : tileSize, stepSize, maxGap, repMatch. There are so insufficient description in the option. Could you tell me about it? Sorry for bothering you. Take care, Thank you. From Taek-Kyun. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
