Good Afternoon:

You can use the following PERL script to manage
your work load to the UCSC server:
http://genomewiki.ucsc.edu/index.php/Blat_Scripts

Or you may use the blat program locally:
http://genome.ucsc.edu/FAQ/FAQblat#blat2

--Hiram

parveen dabas wrote:
> Dear Sir/Madam
> This is Parveen Kumar from Institute of Genomics and Integrative Biology
> (IGIB), New Delhi, India.
> i need to use BLAT facility for more than 2000 sequences( 30 bases length),
> but the max no. of sequences which we can give in input is 25. Is there any
> other alternative for doing the same...
> Thanks
> 
> Regards

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